Showing : SNPlocs • reset
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896
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SNP locus package for mouse?
SNPlocs packFinder
updated 22 months ago by 68k • written 22 months ago by • 0
1
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3
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1.5k
views
Using injectSNPs with a custom set of SNPs
SNPlocs BSgenome
written 2.3 years ago by • 0
0
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1
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894
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs SNPlocs
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by ▴ 20
1
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News: BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome dbSNP T2T-CHM13v2.0 SNPlocs
3.9 years ago Hervé Pagès 16k
0
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1.1k
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how to construct a SNPlocs-class by myself
BSgenome SNPlocs
4.9 years ago Guandong Shang ▴ 40
0
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1
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1.6k
views
3.7 behaviour change with snplocs snpsById?
software error snplocs gpos
updated 7.7 years ago by 16k • written 7.8 years ago by • 0
3
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4
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2.3k
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How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
9.0 years ago Ramiro Magno ▴ 100
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2
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2.2k
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injectSNPS only for common variants
snp snplocs
updated 9.3 years ago by ★ 3.4k • written 9.3 years ago by • 0
0
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1
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1.5k
views
SNPlocs package for dbSNP 135
Cancer SNPlocs Cancer SNPlocs
updated 10.5 years ago by • 0 • written 14.0 years ago by 16k
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6
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3.1k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 10.6 years ago by • 0 • written 16.7 years ago by 16k
1
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6
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3.1k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
11.2 years ago garrisrg ▴ 10
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2
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2.2k
views
using snpid2grange() and/or rsidsToGRanges() for rsid lists with missing
SNPlocs
updated 11.4 years ago by 6.7k • written 11.4 years ago by ▴ 20
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1.9k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.8 years ago swarmqq@gmail.com ▴ 10
0
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3
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2.5k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 12.0 years ago by ▴ 20 • written 12.1 years ago by ★ 4.2k
0
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2
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2.2k
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VCF as custom variant annotation database
Annotation SNPlocs Annotation SNPlocs
updated 12.1 years ago by ★ 6.8k • written 12.1 years ago by ▴ 380
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1
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6.0k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by 16k
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2.4k
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Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
12.2 years ago Hervé Pagès 16k
0
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2.5k
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BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
12.2 years ago Hervé Pagès 16k
0
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1
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1.3k
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custom variant AnnotationDbi?
Annotation SNPlocs Annotation SNPlocs
updated 12.4 years ago by 6.7k • written 12.4 years ago by ▴ 380
0
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2
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4.8k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 12.7 years ago by 16k • written 12.7 years ago by ▴ 970
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4
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2.3k
views
IlluminaHumanMethylation450kprobe for nearest TSS calculation question
Annotation BSgenome SNPlocs BSgenome Annotation BSgenome SNPlocs BSgenome
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ★ 13k
0
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3
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2.4k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 40
0
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0
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1.2k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
13.1 years ago Christina Chaivorapol ▴ 40
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4
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2.7k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 13.4 years ago by 16k • written 13.4 years ago by ▴ 100
0
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3
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1.9k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 13.4 years ago by 16k • written 13.4 years ago by ▴ 100
0
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4
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2.1k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 13.4 years ago by 6.7k • written 13.4 years ago by ★ 13k
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1.5k
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dbSNP strand information
SNPlocs safe SNPlocs safe
14.0 years ago Alex Gutteridge ▴ 650
0
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3
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2.0k
views
Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 650
0
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4
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2.0k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 650
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3
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2.3k
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RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 14.0 years ago by 16k • written 14.0 years ago by ▴ 450
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1
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1.4k
views
custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 14.2 years ago by 16k • written 14.2 years ago by ▴ 100
0
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1
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1.8k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ★ 1.0k
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6
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2.0k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 14.5 years ago by 6.7k • written 14.5 years ago by ★ 4.2k
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7
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2.4k
views
Probe ID to Sequence
SNPlocs GenomicRanges SNPlocs GenomicRanges
updated 14.6 years ago by ★ 4.2k • written 14.6 years ago by ▴ 400
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2
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1.6k
views
seqnames on dbSNP object error
SNPlocs SNPlocs
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 910
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2
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1.9k
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RE : RE : maping SNPs
SNP SNPlocs TranscriptDb IRanges GenomicFeatures SNP SNPlocs TranscriptDb IRanges
updated 15.1 years ago by ★ 6.8k • written 15.1 years ago by ▴ 450
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0
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2.0k
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RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
15.2 years ago Vincent J. Carey, Jr. 6.7k
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1.9k
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New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
15.8 years ago Hervé Pagès 16k
0
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3
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1.5k
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs SNPlocs
updated 16.1 years ago by ▴ 70 • written 16.1 years ago by 21k
0
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1
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3.4k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 16.7 years ago by 16k • written 16.7 years ago by ▴ 90
0
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3
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1.5k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
17.0 years ago Paul Shannon ★ 1.1k
0
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0
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1.7k
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About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP Cancer SNPlocs SNP Cancer SNPlocs
17.0 years ago Hervé Pagès 16k
0
votes
4
replies
3.2k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 17.0 years ago by 16k • written 17.1 years ago by ★ 1.1k
43 results • Page 1 of 1
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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