Bioconductor Bsgenome

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BSgenome

updated 11 weeks ago by James W. MacDonald 65k • written 3 months ago by Kate • 0

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558

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OrgDb BSgenome

6 months ago • updated 3 months ago mat149 ▴ 70

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767

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bsgenome GenomicFeatures package

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Manish • 0

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1.0k

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BSgenomeForge BSgenome

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by kyliecode • 0

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719

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 11 months ago by ATpoint ★ 4.1k • written 11 months ago by Lillian • 0

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607

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SNPlocs BSgenome

written 7 months ago by Stevie Pederson • 0

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874

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BSgenome

updated 4 months ago by eviatar.weizman • 0 • written 2.0 years ago by remerandmaxence ▴ 10

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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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