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cancer
•
reset
0
votes
0
replies
1.7k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
16.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.4k
views
justGCRMA problem :(
GO
Cancer
gcrma
matchprobes
PROcess
affyio
GO
Cancer
gcrma
matchprobes
PROcess
affyio
updated 16.8 years ago by
Jacek Nowak
▴ 20 • written 16.9 years ago by
Martin Morgan
25k
0
votes
0
replies
1.5k
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
16.8 years ago
Vincent Detours
▴ 80
0
votes
0
replies
886
views
Problems reading single channel GenePix data with read.maimages.
Cancer
Cancer
16.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.2k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer
PROcess
ShortRead
charm
Cancer
PROcess
ShortRead
charm
16.8 years ago
Martin Morgan
25k
0
votes
13
replies
4.2k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 16.8 years ago by
Sean Davis
21k • written 16.8 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
0
replies
1.4k
views
Warning in mergeLevels
aCGH
Cancer
aCGH
aCGH
Cancer
aCGH
16.8 years ago
Oscar Rueda
▴ 40
0
votes
0
replies
675
views
script line to multiply a vector by another vector or matrix
Cancer
Cancer
16.8 years ago
Hervé Pagès
16k
0
votes
0
replies
2.3k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
16.9 years ago
Jack Zhu
▴ 170
0
votes
3
replies
1.3k
views
Curious file size issues
Annotation
Cancer
PROcess
Annotation
Cancer
PROcess
updated 16.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
810
views
matchPdict error
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
16.9 years ago
Hervé Pagès
16k
0
votes
3
replies
1.4k
views
Biomart Error
Cancer
biomaRt
Cancer
biomaRt
updated 16.9 years ago by
Rhoda Kinsella
▴ 660 • written 16.9 years ago by
Becky Saunders
▴ 40
0
votes
0
replies
1.3k
views
Assistant/Associate Professor Department of Biostatistics
Pathways
Bayesian
Cancer
charm
Pathways
Bayesian
Cancer
charm
16.9 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
0
replies
1.9k
views
PhD / PostDoc positions in Innsbruck, Austria
Microarray
GO
Cancer
Leukemia
Microarray
GO
Cancer
Leukemia
16.9 years ago
Johannes Rainer
▴ 80
0
votes
0
replies
1.0k
views
Help: Problems with LmFit
Cancer
limma
Cancer
limma
16.9 years ago
julin@aecom.yu.edu
▴ 80
0
votes
3
replies
7.6k
views
org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer
Homo sapiens
convert
Cancer
Homo sapiens
convert
updated 16.9 years ago by
Seraya Maouche
▴ 10 • written 16.9 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
1.5k
views
Repost of Error Message: Error in dim(data)<-dim: attempt to set an atrribute on NULL
Cancer
PROcess
Cancer
PROcess
updated 16.9 years ago by
James W. MacDonald
68k • written 16.9 years ago by
Martin Morgan
25k
0
votes
0
replies
1.7k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
16.9 years ago
Hervé Pagès
16k
1
vote
1
reply
6.3k
views
Limma: Contrasts comparing one factor to multiple others
Cancer
limma
Cancer
limma
updated 16.9 years ago by
James W. MacDonald
68k • written 16.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
1.9k
views
Gostats with Yeast annotation
Microarray
Annotation
GO
Cancer
Yeast
GOstats
Microarray
Annotation
GO
Cancer
Yeast
16.9 years ago
Yolande Tra
▴ 160
0
votes
0
replies
1.1k
views
Limma contrasts with model.matrix
Microarray
Cancer
Microarray
Cancer
16.9 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.3k
views
qPCR 2009 Event Agenda Online
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
microRNA
SNP
qPCR
Cancer
16.9 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.3k
views
[JOB] National Cancer Institute, Bethesda, MD
Sequencing
miRNA
Microarray
Genetics
Cancer
Sequencing
miRNA
Microarray
Genetics
Cancer
17.0 years ago
Sean Davis
21k
0
votes
2
replies
1.2k
views
read.maimages(limma) source="agilent" updated for 20-bit scanner?
Cancer
Cancer
updated 17.0 years ago by
Sean Davis
21k • written 17.0 years ago by
Coleman, Ilsa
▴ 30
0
votes
0
replies
2.1k
views
getSeq human genomic sequences
Annotation
Cancer
BSgenome
PROcess
GLAD
BSgenome
IRanges
Annotation
Cancer
BSgenome
GLAD
17.0 years ago
Hervé Pagès
16k
0
votes
3
replies
1.5k
views
Limma without eBayes correction
Cancer
limma
Cancer
limma
updated 17.0 years ago by
James W. MacDonald
68k • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
1.7k
views
BiomaRt error when trying to get exon location info
Cancer
biomaRt
Cancer
biomaRt
updated 17.0 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
957
views
LIMMA Error Message:Error in new("AnnotatedDataFrame", data = phenotypicdata) : trying to generate an object from a virtual class ("AnnotatedDataFram…
Cancer
limma
Cancer
limma
17.0 years ago
Martin Morgan
25k
0
votes
2
replies
1.2k
views
Adding names to a IRanges object
Cancer
IRanges
Cancer
IRanges
updated 17.0 years ago by
Michael Lawrence
▴ 620 • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
2.0k
views
Genome position to miRNA or gene name
miRNA
Alignment
GO
Cancer
BSgenome
BSgenome
miRNA
Alignment
GO
Cancer
BSgenome
BSgenome
updated 17.0 years ago by
Martin Morgan
25k • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
full Professor position in bioinformatics in Innsbruck, Austria
Cancer
Cancer
17.0 years ago
Johannes Rainer
▴ 80
0
votes
0
replies
1.4k
views
SAM warning
Biophysics
Alignment
Annotation
Normalization
Cancer
hgu133plus2
probe
affy
vsn
MBCB
vsn
17.0 years ago
elliot harrison
▴ 230
0
votes
6
replies
3.6k
views
Filtering before differential expression analysis of microarrays - New paper out
Cancer
Cancer
updated 17.0 years ago by
Gordon Smyth
53k • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.1k
views
multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data
Alignment
Annotation
Cancer
hgu133plus2
probe
affy
Biostrings
Alignment
Annotation
Cancer
17.0 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.3k
views
Luminex Data Analysis
Cancer
Cancer
17.0 years ago
Samuel Pine
▴ 10
0
votes
0
replies
5.1k
views
Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class
Cancer
limma
Cancer
limma
17.0 years ago
Martin Morgan
25k
0
votes
0
replies
1.5k
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
microRNA
SNP
qPCR
Cancer
17.0 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
935
views
how can I apply a function to each element of a GeneSetCollection (GSEABase)
Cancer
Cancer
17.0 years ago
Martin Morgan
25k
0
votes
1
reply
1.7k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
17.1 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
769
views
Question about graph package
Cancer
graph
Rgraphviz
Cancer
graph
Rgraphviz
17.1 years ago
Florian Hahne
▴ 540
0
votes
0
replies
1.6k
views
sd==0 for some probesets when using gcrma
Microarray
Proteomics
Epigenetics
Normalization
GO
Cancer
hgu95av2
affy
graph
gcrma
GO
17.1 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
989
views
Detecting mRNA Expression When Somatic Mutations Have
Microarray
Cancer
Microarray
Cancer
17.1 years ago
Alicia Oshlack
▴ 70
0
votes
0
replies
1.1k
views
Cannot Subset Columns in beadarray package, ExpressionSetIllumina Class in R-2.8.0, BioBase 2.2.1, beadarray 1.10.0
Cancer
beadarray
Cancer
beadarray
17.1 years ago
Julian Lee
▴ 140
0
votes
0
replies
831
views
Problem of combine function when combining different numeric types
Cancer
convert
Cancer
convert
17.1 years ago
Martin Morgan
25k
0
votes
0
replies
873
views
Colourful way of visualising differential analysis results
Microarray
Cancer
limma
Microarray
Cancer
limma
17.1 years ago
Yannick Wurm
▴ 220
0
votes
2
replies
2.3k
views
[R] BioC 2.3 standard installation
Cancer
preprocessCore
Cancer
preprocessCore
17.1 years ago
Hervé Pagès
16k
0
votes
0
replies
1.5k
views
Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
GUI
Cancer
Breast
hgu133plus2
PROcess
rtracklayer
microRNA
GUI
Cancer
Breast
hgu133plus2
17.1 years ago
Steven McKinney
▴ 310
0
votes
3
replies
1.7k
views
Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Cancer
Breast
rtracklayer
microRNA
Cancer
Breast
rtracklayer
microRNA
updated 17.1 years ago by
Luo Weijun
★ 1.6k • written 17.1 years ago by
Steven McKinney
▴ 310
0
votes
4
replies
2.0k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
17.1 years ago
Steven McKinney
▴ 310
0
votes
2
replies
801
views
Download numbers
Cancer
Cancer
updated 17.2 years ago by
Diego Diez
▴ 760 • written 17.2 years ago by
Hervé Pagès
16k
1,555 results • Page
18 of 32
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Replies
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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