Showing : cancer • reset
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JOB: Cancer Research UK - Cambridge Research Institute Bioinformatics Core
Sequencing Microarray Cancer Sequencing Microarray Cancer
16.5 years ago Mark Dunning ★ 1.1k
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PRO-NEST postdoc position PHILIPS RESEARCH. prostate cancer functional biomarker validation (www.pro-nest.com)
Cancer Prostate Cancer Prostate
16.5 years ago Paul Hammer ▴ 220
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1.5k
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CGHregions error
Cancer CGHcall CGHregions Cancer CGHcall CGHregions
16.5 years ago Daniel Rico ▴ 110
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754
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[Bioc-sig-seq] Error in assign while calling the vmatchPattern function
Cancer Cancer
16.5 years ago Hervé Pagès 16k
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0
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1.5k
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Job Opportunity at IMP, Vienna, Austria
Cancer Cancer
16.5 years ago Ido M. Tamir ▴ 150
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1.1k
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Illumina 610 Quad SNP chips
SNP Cancer Colon SNP Cancer Colon
16.5 years ago Dmitri Mouradov ▴ 20
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2.0k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
16.5 years ago Joern Toedling ▴ 450
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11
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3.8k
views
Venn Diagram
Cancer ABarray Cancer ABarray
updated 16.5 years ago by ▴ 450 • written 16.5 years ago by 16k
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4
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1.7k
views
Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 16.6 years ago by ▴ 450 • written 16.6 years ago by ▴ 80
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4
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1.8k
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Oligo error on OS X Leopard
Cancer oligo Cancer oligo
updated 16.6 years ago by 6.7k • written 16.6 years ago by ★ 1.9k
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1.3k
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ANNOUNCEMENT: 20% discount on the most recent bioconductor/R books from Chapman & Hall/CRC!
Cancer PROcess Cancer PROcess
16.6 years ago Calver, Rob ▴ 10
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4
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2.2k
views
GSEABase on none affy data/mapping problem(?)
Annotation GO Cancer probe affy Annotation GO Cancer probe affy
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 40
0
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1
reply
934
views
Error in assign while calling the vmatchPattern function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 16.6 years ago by ★ 2.4k • written 16.6 years ago by 16k
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0
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907
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Change M-value calculation from red/green to green/red
Microarray Normalization Cancer limma Microarray Normalization Cancer limma
16.6 years ago Gordon Smyth 53k
0
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2
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832
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missing content in limma documentation pdf
Cancer limma Cancer limma
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 80
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2
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1.5k
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Change M-value calculation from red/green to green/red
Microarray Normalization Cancer limma Microarray Normalization Cancer limma
updated 16.6 years ago by ★ 3.4k • written 16.6 years ago by ▴ 80
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1
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1.5k
views
FW: biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.6 years ago john seers IFR ▴ 810
0
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1
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1.2k
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biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.6 years ago john seers IFR ▴ 810
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0
replies
725
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Installation of a custom cdf hs133phsentrezgcdf
Cancer hgu133plus2 cdf Cancer hgu133plus2 cdf
16.6 years ago Martin Morgan 25k
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2.7k
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How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
16.6 years ago Martin Morgan 25k
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1.5k
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Simple beadarraySNP analysis
SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer
16.7 years ago Dmitri Mouradov ▴ 20
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3
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6.3k
views
upregulated or downregulated?
Cancer limma Cancer limma
updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ▴ 20
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3
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1.6k
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problem with biocLite("Biobase") -- results in looping of download
Cancer Biobase Cancer Biobase
updated 16.7 years ago by ▴ 830 • written 16.7 years ago by 25k
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0
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1.8k
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LIMMA contrast matrix for three-way ANOVA with many comparisons
Cancer limma Cancer limma
16.7 years ago Levi Waldron ★ 1.1k
0
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2
replies
1.2k
views
mislinked task views?
Cancer Category Cancer Category
updated 16.7 years ago by 6.7k • written 16.7 years ago by ▴ 180
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.7 years ago Min-Han Tan ▴ 40
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4
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2.0k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ★ 1.1k
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5
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2.5k
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Finding differentially expressed genes using Ebayes
Cancer Cancer
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 90
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765
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limma design, 3 biological reps (two with a tech rep, one without)
Cancer limma Cancer limma
16.7 years ago Ryan Basom ▴ 20
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3
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1.7k
views
flowClust results in subset filters
Cancer flowCore flowClust Cancer flowCore flowClust
updated 16.7 years ago by ▴ 50 • written 16.7 years ago by ▴ 540
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992
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KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
16.7 years ago Daniel Brewer ★ 1.9k
0
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1.1k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
16.7 years ago Ben Madin ▴ 20
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3
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6.6k
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multiple ColSideColors-type annotations on a heatmap
Cancer annotate Cancer annotate
updated 16.7 years ago by ▴ 610 • written 16.7 years ago by ★ 1.1k
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0
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1.1k
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Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.7 years ago Hervé Pagès 16k
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0
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2.3k
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Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
16.7 years ago Paul Hammer ▴ 220
0
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1
reply
1.1k
views
GenomeGraphs
Cancer graph Cancer graph
updated 16.7 years ago by ▴ 970 • written 16.7 years ago by ▴ 140
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2
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1.3k
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Problem loading data for Agi4x44PreProcess
Cancer Agi4x44PreProcess Cancer Agi4x44PreProcess
16.7 years ago Bernal-Mizrachi, Leon ▴ 50
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1.5k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL Cancer RdbiPgSQL
16.7 years ago John Zhang ★ 2.9k
0
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1
reply
907
views
Best way to find genes that represent a group
Microarray Cancer limma Microarray Cancer limma
updated 16.7 years ago by 21k • written 16.7 years ago by ★ 1.9k
0
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4
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1.3k
views
How to get a development version of a package?
Cancer Cancer
16.7 years ago Daniel Brewer ★ 1.9k
0
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7
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4.4k
views
Visualise KEGG pathway and highlight genes
Cancer KEGGgraph Cancer KEGGgraph
updated 16.8 years ago by ▴ 140 • written 16.8 years ago by ★ 1.9k
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1
reply
1.1k
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ★ 1.9k
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3
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1.7k
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evaluating a character string as a variable name in an ExpressionSet object
Cancer Cancer
16.8 years ago Martin Morgan 25k
0
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6
replies
12k
views
Gene symbol to KEGG gene ids
Annotation Cancer Annotation Cancer
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ★ 1.9k
0
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2
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1.3k
views
Mapping chromosome and nucleotide position to gene name
Cancer Breast Cancer Breast
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ▴ 310
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2
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1.3k
views
How to check if gene name is an alias or misspelt
Cancer Cancer
updated 16.8 years ago by 16k • written 16.8 years ago by ★ 1.9k
0
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0
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921
views
How to check if gene name is an alias or misspelt
Cancer convert Cancer convert
16.8 years ago Gordon Smyth 53k
0
votes
1
reply
1.6k
views
flowCore / flowViz: densityplot of FCS file without time channel
Cancer Cancer
updated 16.8 years ago by ▴ 540 • written 16.8 years ago by ▴ 80
0
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2
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1.2k
views
KEGG analysis
Network Cancer Network Cancer
16.8 years ago Daniel Brewer ★ 1.9k
0
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0
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649
views
[Fwd: [biocore] Rgraphviz on 64bit systems]
Cancer Rgraphviz Cancer Rgraphviz
16.8 years ago rgentleman ★ 5.5k
1,555 results • Page 17 of 32
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Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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Commentator to James W. MacDonald 68k
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