Showing : cancer • reset
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how to cite "lumi"?
Microarray Annotation Normalization Cancer lumi Microarray Annotation Normalization Cancer
17.8 years ago Pan Du ★ 1.2k
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1.6k
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Heatmap color Key
Microarray Cancer Heatplus Microarray Cancer Heatplus
17.8 years ago Gregory Warnes ▴ 50
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1
reply
912
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stability of gene lists with gcrma and limma upon changing the number of samples in the normalization
Cancer limma gcrma Cancer limma gcrma
updated 17.8 years ago by 21k • written 17.8 years ago by ★ 2.0k
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problem with analyzing human 244k agilent array with snapCGH
Annotation Cancer snapCGH Annotation Cancer snapCGH
17.8 years ago Sean Davis 21k
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1.3k
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Postdoctoral Research @ Cold Spring Harbor Laboratory
Sequencing Genetics Cancer Sequencing Genetics Cancer
17.8 years ago Matthew Vaughn ▴ 30
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1.2k
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Extracting expressions after a multtest procedure (part2)
Cancer multtest Cancer multtest
17.8 years ago JUAN MIGUEL MARIN DIAZARAQUE ▴ 70
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1.6k
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Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 17.8 years ago by 68k • written 17.8 years ago by ★ 2.0k
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1
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1.7k
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calculating median expression between to identical gene names in data frame
Clustering Cancer affy Clustering Cancer affy
updated 17.9 years ago by ★ 1.8k • written 17.9 years ago by ▴ 600
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passing in parameters to annotation packages (e.g hgu95av2)
Annotation Cancer probe Annotation Cancer probe
17.9 years ago Martin Morgan 25k
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2
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1.4k
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probe file for custom array
Microarray Cancer cdf probe gcrma matchprobes Microarray Cancer cdf probe gcrma
updated 17.9 years ago by ★ 1.3k • written 17.9 years ago by 68k
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2
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2.2k
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Agilent 4x44k annotation file
Microarray Annotation Cancer Microarray Annotation Cancer
updated 17.9 years ago by 21k • written 17.9 years ago by ★ 1.9k
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980
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post-doc position at the FHCRC
Visualization Cancer Visualization Cancer
17.9 years ago rgentleman ★ 5.5k
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1.0k
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ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
17.9 years ago Martin Morgan 25k
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783
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Limma: merging two scans of two-color arrays and spot weights
Microarray Cancer Microarray Cancer
17.9 years ago Serge Eifes ▴ 90
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1.4k
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pamr.cv function
Cancer pamr Cancer pamr
17.9 years ago Patricia Greninger ▴ 10
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1.5k
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JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
17.9 years ago Robert Castelo ★ 3.4k
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860
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About a problem with databases
Cancer Cancer
17.9 years ago JUAN MIGUEL MARIN DIAZARAQUE ▴ 70
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2
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1.2k
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GO summary of a list of genes?
Cancer Breast Cancer Breast
updated 17.9 years ago by 25k • written 17.9 years ago by ▴ 40
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2
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971
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Bioconductor/R on AIX?
Cancer Cancer
updated 17.9 years ago by ★ 6.5k • written 17.9 years ago by ▴ 30
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1.5k
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postdoc position available at FHCRC
Cancer HIV Cancer HIV
18.0 years ago Harlan Robins ▴ 10
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3
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2.1k
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CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 18.0 years ago by ★ 2.4k • written 18.0 years ago by ▴ 110
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2
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1.6k
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understanding ACME
Annotation Cancer ACME Annotation Cancer ACME
updated 18.0 years ago by 21k • written 18.0 years ago by ★ 1.1k
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1.4k
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How to use the same node layout for a set of graph plots using graph and Rgraphviz?
Cancer graph Rgraphviz Cancer graph Rgraphviz
18.0 years ago Rand, Hugh ▴ 50
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1.1k
views
rowQ error
Cancer genefilter Cancer genefilter
18.0 years ago Dennis.Burian@faa.gov ▴ 90
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2
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1.3k
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Combine two data frames with different columns
Cancer Cancer
updated 18.0 years ago by 21k • written 18.0 years ago by ★ 1.9k
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2
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2.2k
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Storey and Tibshirani FDR
Cancer Cancer
updated 18.0 years ago by ▴ 140 • written 18.0 years ago by ★ 1.9k
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1
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829
views
Increase accuracy of calculations
GO Cancer limma GO Cancer limma
updated 18.0 years ago by 6.7k • written 18.0 years ago by ★ 1.9k
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1
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1.6k
views
MiPP
Cancer MiPP Cancer MiPP
18.0 years ago Julian Lee ▴ 140
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1.7k
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GOstats locked database
GO Cancer GOstats GO Cancer GOstats
18.0 years ago Janet Young ▴ 740
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10
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2.6k
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exonmap RMA function
Microarray Cancer affyPLM exonmap Microarray Cancer affyPLM exonmap
updated 18.0 years ago by ▴ 250 • written 18.0 years ago by 25k
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1.1k
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normal/cancer expression datasets
Cancer Cancer
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by ▴ 90
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3
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1.4k
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problems with marray and gpr files
Cancer limma Cancer limma
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by ▴ 70
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1000
views
Post-doctoral position
Cancer Cancer
18.0 years ago Kellie J. Archer, Ph.D. ▴ 120
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2.1k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
18.0 years ago Jean Yee Hwa Yang ▴ 130
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770
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Updating Bioconductor with standard R tools: what repository?
Cancer Cancer
18.0 years ago Martin Morgan 25k
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1.5k
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Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
18.0 years ago Holger Schwender ▴ 900
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5
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2.1k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 18.0 years ago by ▴ 290 • written 18.0 years ago by ▴ 740
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1
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1.4k
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Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 18.0 years ago by ★ 13k • written 18.0 years ago by 25k
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0
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842
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error with biomaRt in mysql mode
Cancer biomaRt Cancer biomaRt
18.1 years ago Janet Young ▴ 740
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785
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EBImage Problem
Cancer EBImage Cancer EBImage
18.1 years ago Ellul Jason ▴ 20
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1.4k
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Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
18.1 years ago Julian Lee ▴ 140
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1
reply
888
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error with biomaRt in mysql mode
Cancer biomaRt Cancer biomaRt
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 740
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1.1k
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custom subset method / handling columns selection as logic in '...' parameter
Cancer Biobase Cancer Biobase
18.1 years ago Martin Morgan 25k
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1.3k
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Statistical Analyst Openings at UT M.D. Anderson Cancer Center
Cancer Cancer
18.1 years ago caiwei@mdanderson.org ▴ 110
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1.9k
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BIRD 2008 Conference Call for papers
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
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1.8k
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BIRD 2008
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
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1.9k
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BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
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2
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1.1k
views
About subsampling of VST in lumi
Cancer lumi Cancer lumi
updated 18.1 years ago by ▴ 50 • written 18.1 years ago by ★ 1.2k
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1.2k
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biocLite to install a local binary sourced package for mac
Cancer Cancer
18.1 years ago Martin Morgan 25k
0
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1
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939
views
Expanding table to all possible factors
Cancer Cancer
updated 18.1 years ago by ▴ 310 • written 18.1 years ago by ★ 1.9k
1,555 results • Page 21 of 32
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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