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cancerdata
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Job:
Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics
cancerdata
Pathways
3 months ago
omicsresearch
• 0
0
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2
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1.3k
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Error with TCGA package - TCGAbiolinks
TCGAbiolinks
RNASeq
CancerData
updated 20 months ago by
Tiago C. Silva
▴ 270 • written 22 months ago by
JAcky
• 0
2
votes
3
replies
1.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 2.4 years ago by
Steve Lianoglou
★ 13k • written 2.4 years ago by
Caitlin
▴ 50
1
vote
1
reply
1.1k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray
GEOquery
cancerdata
MicroarrayData
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
Caitlin
▴ 50
0
votes
0
replies
694
views
Job:
PDRA in Computational Biophysics and Cancer Research, University of Manchester, UK
CancerData
StructuralGenomics
VirusStability
pH-dependence
2.7 years ago
jim.warwicker
• 0
5 results • Page
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Recent ...
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Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
I'm new here, but its better now?
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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Michael Love
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shepherl
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taur.vil
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Yuan Tian
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