Bioconductor Cancerdata

Showing : cancerdata • reset

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omics cancerdata Pathways

2.2 years ago omicsresearch • 0

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TCGAbiolinks RNASeq CancerData

updated 3.6 years ago by Tiago C. Silva ▴ 270 • written 3.7 years ago by JAcky • 0

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GEOquery CancerData limma RCy3 CancerInSilico

updated 4.3 years ago by Steve Lianoglou ★ 13k • written 4.3 years ago by Caitlin ▴ 50

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Microarray GEOquery cancerdata MicroarrayData

updated 4.5 years ago by James W. MacDonald 68k • written 4.5 years ago by Caitlin ▴ 50

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CancerData StructuralGenomics VirusStability pH-dependence

4.6 years ago jim.warwicker • 0

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Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

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Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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