Showing : category • reset
2
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2
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1.1k
views
rownames for categoryReshape
Category
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
1
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0
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1.3k
views
enrichment analysis for gene pairs
go gostats category gsea
8.5 years ago Hector Corrada Bravo ▴ 60
1
vote
0
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2.1k
views
TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
12.3 years ago Paul Geeleher ★ 1.3k
1
vote
0
replies
1.2k
views
how to fetch GO categories from Chinese hamster genome
GO Category goseq
9.7 years ago upendra kumar devisetty ▴ 30
1
vote
1
reply
1.2k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
1
vote
0
replies
883
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
15.2 years ago Nishant Gopalakrishnan ▴ 340
0
votes
4
replies
1.6k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 80
0
votes
1
reply
941
views
warnings or potential problems in limma procedure
limma Category limma Category
13.1 years ago Yi, Ming NIH/NCI [C] ▴ 100
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
0
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0
replies
740
views
Expression Array databases...
Category Category
21.5 years ago Anthony Rossini ▴ 530
0
votes
0
replies
1.3k
views
InfoVis 2003 Call for Papers
Visualization PROcess Category Visualization PROcess Category
21.3 years ago rgentleman ★ 5.5k
0
votes
0
replies
621
views
RMA question (weighted averages)
Category Category
20.7 years ago Chris Paulse ▴ 90
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
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0
replies
646
views
display spots of multiple control status (maControls)
Category Category
20.5 years ago Foata,Francis,LAUSANNE,NRC/N&H ▴ 40
0
votes
2
replies
1.2k
views
Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
updated 11.3 years ago by ▴ 60 • written 11.3 years ago by ★ 13k
0
votes
0
replies
768
views
GOstats gene set size selection
Microarray GO GOstats Category Microarray GO GOstats Category
16.0 years ago alex lam RI ▴ 30
0
votes
1
reply
1.0k
views
KNN, SVM, and randomForest - How to predict samples without category
Category Category
updated 19.8 years ago by ▴ 60 • written 19.8 years ago by ▴ 120
0
votes
0
replies
1.1k
views
loading SMD...
Cancer Breast Organism probe Category Cancer Breast Organism probe Category
19.9 years ago Mayte Suarez-Farinas ▴ 300
0
votes
2
replies
1.3k
views
KNN, SVM, and randomForest - How to predict test without known categories
Category Category
updated 19.8 years ago by ★ 1.8k • written 19.8 years ago by ▴ 120
0
votes
0
replies
1.3k
views
KNN, SVM, and randomForest - How to predict test without known categories (affy data)
Microarray Category Microarray Category
19.8 years ago Liu, Xin ▴ 120
0
votes
1
reply
1.6k
views
KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
updated 19.8 years ago by ★ 1.8k • written 19.8 years ago by ▴ 120
0
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0
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1.2k
views
Re: KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
19.8 years ago Kasper Daniel Hansen ▴ 630
0
votes
1
reply
733
views
GoHyperG question
GO GOstats Category GO GOstats Category
updated 19.8 years ago by ★ 2.9k • written 19.8 years ago by ▴ 10
0
votes
1
reply
813
views
how to exrtact col. names from exprs()
GO Category GO Category
updated 19.7 years ago by ★ 1.8k • written 19.7 years ago by ▴ 320
0
votes
1
reply
957
views
Affy mas5calls on Hu6800 arrays
Cancer hu6800 probe affy Category Cancer hu6800 probe affy Category
19.5 years ago Stronach, Euan A ▴ 20
0
votes
4
replies
1.4k
views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 19.2 years ago by ▴ 310 • written 19.2 years ago by ▴ 250
0
votes
3
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963
views
Trouble using GOstats
GO hgu133a Category GO hgu133a Category
updated 19.1 years ago by ★ 5.5k • written 19.1 years ago by ▴ 80
0
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0
replies
656
views
How to start?
Classification Clustering Category Classification Clustering Category
19.1 years ago Malik Yousef ▴ 40
0
votes
6
replies
1.2k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 40
0
votes
1
reply
959
views
Limma and Genepix
limma Category limma Category
updated 19.0 years ago by 50k • written 19.0 years ago by ▴ 40
0
votes
0
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1.2k
views
edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Category edgeR Category edgeR
12.6 years ago Emanuel Heitlinger ▴ 30
0
votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
0
votes
1
reply
808
views
Multtest
probe Category probe Category
updated 18.1 years ago by ★ 1.0k • written 18.1 years ago by ▴ 30
0
votes
0
replies
757
views
Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
20.0 years ago John Zhang ★ 2.9k
0
votes
1
reply
1.1k
views
GO annotation inconsistency
Annotation GO probe Category Annotation GO probe Category
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 70
0
votes
0
replies
579
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
720
views
about packages GO, Gostats,...
GO GOstats Category GO GOstats Category
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 70
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
votes
0
replies
1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.5 years ago Kimpel, Mark W ▴ 890
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 890
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
0
votes
1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 300
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
0
replies
558
views
Category/ summery student project
Category Category
17.2 years ago Simon Lin ▴ 270
0
votes
3
replies
1.8k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.1 years ago Paquet, Agnes ▴ 500
0
votes
6
replies
1.4k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 7.4k
0
votes
2
replies
865
views
dye effects stronger than dye-swaps?
Microarray Normalization Category Microarray Normalization Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 2.2k
0
votes
3
replies
1.3k
views
grep GOID, R problem or my problem?
GO affy Category GO affy Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 810
50 results • Page 1 of 1
Recent ...
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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