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cds
•
reset
0
votes
4
replies
1.7k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
q.thomas
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
rubi
▴ 110
3
votes
1
reply
1.9k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.5k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.7 years ago
madsheilskov
▴ 10
0
votes
3
replies
1.9k
views
how to get complete cds annotation information ?
cds
8.4 years ago
KB
▴ 50
2
votes
10
replies
2.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.5 years ago by
balajee
• 0 • written 8.5 years ago by
madsheilskov
▴ 10
8 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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