Biostar Cds

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730

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txdb granges cds orf R

updated 3.3 years ago by James W. MacDonald 58k • written 3.3 years ago by q.thomas • 0

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570

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Annotatr CDS Exon UTR

updated 3.6 years ago by rcavalca ▴ 140 • written 3.6 years ago by xie186 • 0

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980

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genomeintervals UTRs exons CDS GenomicRanges

updated 4.1 years ago by Michael Lawrence 11k • written 4.1 years ago by rubi ▴ 90

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975

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biomart bioconductor grangeslist cds ribosome profiling

updated 4.3 years ago by Hervé Pagès 15k • written 4.3 years ago by Walter F. Baumann ▴ 10

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1.3k

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

5.0 years ago madsheilskov • 0

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1.1k

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cds

5.8 years ago K ▴ 50

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1.1k

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genomicfeatures genomicranges cds overlap

updated 5.8 years ago by Michael Lawrence 11k • written 5.8 years ago by madsheilskov • 0

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897

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genomicfeatures genomicranges cds overlap

5.8 years ago madsheilskov • 0

8 results • Page 1 of 1

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Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330