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cds
•
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0
votes
4
replies
940
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Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 3.9 years ago by
James W. MacDonald
59k • written 3.9 years ago by
q.thomas
• 0
1
vote
3
replies
693
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 4.3 years ago by
rcavalca
▴ 140 • written 4.3 years ago by
xie186
• 0
2
votes
1
reply
1.1k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 4.8 years ago by
Michael Lawrence
11k • written 4.8 years ago by
rubi
▴ 100
3
votes
1
reply
1.2k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 5.0 years ago by
Hervé Pagès
15k • written 5.0 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
1.5k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
5.7 years ago
madsheilskov
• 0
0
votes
3
replies
1.3k
views
how to get complete cds annotation information ?
cds
6.4 years ago
K
▴ 50
2
votes
10
replies
1.3k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 6.4 years ago by
Michael Lawrence
11k • written 6.4 years ago by
madsheilskov
• 0
0
votes
1
reply
971
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 5 months ago by
balajee
• 0 • written 6.4 years ago by
madsheilskov
• 0
8 results • Page
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Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
Part 2; continuation of Part 1 above... > # !! got same error as reported !! > > # ... but do these 150 LOCs have a GO annotat…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
I had a closer look at this, and the error you got is actually somewhat misleading; it is not that you are using the wrong ids (ids that ar…
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
by
vanbelj
▴ 10
Below is a [solution][1] to extract and average counts across replicates from a dds using Base R. If you're familiar with ```limma``` you …
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
• 0
Sorry for the incomplete information. I have bacterial RNASeq pair end data and using subread/Rsubread on Rstudio and ubuntu, after few sec…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
No, you have it wrong way around. If you want deviance explained by x1, then you need ``` R2_x1 <- ( deviance without x1 in model - devia…
Votes
Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
Answer: Use MulticoreParam under BatchtoolsParam
Answer: Variance explained (coefficient of determination) in edgeR
HTSeq Counts no longer available
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James W. MacDonald
59k
Popular Question
to
Johannes Rainer
★ 1.9k
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Gordon Smyth
45k
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Julie Zhu
★ 4.3k
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Hervé Pagès
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