Biostar Cds

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940

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txdb granges cds orf R

updated 3.9 years ago by James W. MacDonald 59k • written 3.9 years ago by q.thomas • 0

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693

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Annotatr CDS Exon UTR

updated 4.3 years ago by rcavalca ▴ 140 • written 4.3 years ago by xie186 • 0

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1.1k

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genomeintervals UTRs exons CDS GenomicRanges

updated 4.8 years ago by Michael Lawrence 11k • written 4.8 years ago by rubi ▴ 100

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1.2k

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biomart bioconductor grangeslist cds ribosome profiling

updated 5.0 years ago by Hervé Pagès 15k • written 5.0 years ago by Walter F. Baumann ▴ 10

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1.5k

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

5.7 years ago madsheilskov • 0

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1.3k

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cds

6.4 years ago K ▴ 50

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1.3k

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genomicfeatures genomicranges cds overlap

updated 6.4 years ago by Michael Lawrence 11k • written 6.4 years ago by madsheilskov • 0

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971

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genomicfeatures genomicranges cds overlap

updated 5 months ago by balajee • 0 • written 6.4 years ago by madsheilskov • 0

8 results • Page 1 of 1

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Comment: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

Part 2; continuation of Part 1 above... > # !! got same error as reported !! > > # ... but do these 150 LOCs have a GO annotat…

Comment: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

I had a closer look at this, and the error you got is actually somewhat misleading; it is not that you are using the wrong ids (ids that ar…

Answer: DESeq2: Extracting Averaged Counts Information from dds and rld by vanbelj ▴ 10

Below is a [solution][1] to extract and average counts across replicates from a dds using Base R. If you're familiar with ```limma``` you …

Comment: featureCounts: 0% successfully assigned fragments by KMS • 0

Sorry for the incomplete information. I have bacterial RNASeq pair end data and using subread/Rsubread on Rstudio and ubuntu, after few sec…

Comment: Variance explained (coefficient of determination) in edgeR by Gordon Smyth 45k

No, you have it wrong way around. If you want deviance explained by x1, then you need ``` R2_x1 <- ( deviance without x1 in model - devia…

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Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0

Answer: Use MulticoreParam under BatchtoolsParam

Answer: Variance explained (coefficient of determination) in edgeR

HTSeq Counts no longer available

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Scholar to James W. MacDonald 59k

Popular Question to Johannes Rainer ★ 1.9k