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cds
•
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0
votes
4
replies
1.5k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 5.5 years ago by
James W. MacDonald
64k • written 5.5 years ago by
q.thomas
• 0
1
vote
3
replies
1.2k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 5.8 years ago by
rcavalca
▴ 140 • written 5.8 years ago by
xie186
• 0
2
votes
1
reply
1.5k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.3 years ago by
Michael Lawrence
11k • written 6.3 years ago by
rubi
▴ 110
3
votes
1
reply
1.7k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 6.5 years ago by
Hervé Pagès
16k • written 6.5 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.2k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.2 years ago
madsheilskov
• 0
0
votes
3
replies
1.7k
views
how to get complete cds annotation information ?
cds
8.0 years ago
KB
▴ 50
2
votes
10
replies
1.9k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.0 years ago by
Michael Lawrence
11k • written 8.0 years ago by
madsheilskov
• 0
0
votes
1
reply
1.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.0 years ago by
balajee
• 0 • written 8.0 years ago by
madsheilskov
• 0
8 results • Page
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Recent ...
Replies
Comment: GOslim missing GO term
by
amanda
• 0
Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.
Comment: GOslim missing GO term
by
James W. MacDonald
64k
Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …
Comment: GOslim missing GO term
by
amanda
• 0
For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…
Comment: GOslim missing GO term
by
James W. MacDonald
64k
What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…
Comment: GOslim missing GO term
by
amanda
• 0
I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
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