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cel
•
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0
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2
replies
2.6k
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Problems opening cel files
cel
8.2 years ago
ranjita_duttaroy
• 0
0
votes
3
replies
2.4k
views
view .CEL file- in both windows and ubuntu
cel
.cel fiels
7.2 years ago
farahqureshi5
• 0
3
votes
1
reply
2.4k
views
Processing RAW CEL files from GEO
CEL
RAW
geoquery
readaffy
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
PyPer
▴ 20
0
votes
1
reply
2.0k
views
how to get tissue name of cel files?
pca
oligo
cel
updated 8.9 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60 • written 8.9 years ago by
angel.ruvalkba
• 0
0
votes
2
replies
2.0k
views
CEL to Cibersort mix files, fails find Affymatrix specs
affy
cel
8.4 years ago
thrabe
• 0
0
votes
2
replies
1.9k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.7 years ago
ladhikari
• 0
0
votes
5
replies
1.9k
views
collect an expression dataset
limma
CEL
GEO
affydata
expresiondataset
updated 8.4 years ago by
Robert Castelo
★ 3.3k • written 8.4 years ago by
libya.tahani
• 0
1
vote
3
replies
1.4k
views
Reading CEL files
cel
affy
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
libya.tahani
• 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package
Rstudio
fatal error
microarray
CEL
6.5 years ago
biostR
▴ 10
0
votes
0
replies
1.1k
views
Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
gene expression
gene expression data
cel
affy
affymatrix
6.3 years ago
torgeirous
• 0
0
votes
2
replies
992
views
How to process triplicate cel data?
microarray
affy
cel
drugmatrix
updated 3.9 years ago by
Gordon Smyth
50k • written 3.9 years ago by
peirinl
• 0
0
votes
3
replies
698
views
Input files for Affymetrix platform
Affymetrix
CEL
TXT
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
pbachali
▴ 50
12 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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