Showing : cgh • reset
5
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3
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1.6k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.7 years ago by 21k
2
votes
3
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1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.5 years ago by 50k • written 11.7 years ago by ★ 1.5k
1
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2
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2.3k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.7 years ago • updated 6.5 years ago Gordon Smyth 50k
0
votes
0
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1.3k
views
Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
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0
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679
views
cgh
CGH CGH
19.3 years ago Auer Michael ▴ 250
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0
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
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1
reply
791
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
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0
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608
views
lowess, quantreg, waveslim
CGH CGH
18.7 years ago Sorani, Marco ▴ 30
0
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0
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1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.1 years ago Mark Reimers ▴ 70
0
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3
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1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 17.9 years ago by ▴ 190 • written 17.9 years ago by 21k
0
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
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0
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894
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
0
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0
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674
views
spotsegmentation
CGH spotSegmentation CGH spotSegmentation
17.9 years ago Abdel Benajjou ▴ 10
0
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0
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889
views
Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
17.8 years ago Richard Birnie ▴ 10
0
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0
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1.0k
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.7 years ago Aedin Culhane ▴ 510
0
votes
1
reply
989
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.7 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.5 years ago by ▴ 310 • written 17.5 years ago by ▴ 30
0
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0
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1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
0
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1
reply
704
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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5
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1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
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0
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671
views
what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
17.3 years ago Betty Gilbert ▴ 50
0
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0
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743
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.1 years ago Ruppert Valentino ▴ 270
0
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0
replies
1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.8 years ago by ▴ 70 • written 16.8 years ago by ★ 1.9k
0
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8
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1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
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1
reply
818
views
array CGH software
CGH CGH
written 16.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
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4
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1.1k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
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4
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1.3k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
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1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
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4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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1
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1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
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8
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2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
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0
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599
views
Array CGH from A-Z
CGH CGH
16.4 years ago Srinivas Iyyer ▴ 600
0
votes
5
replies
1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.3 years ago by ▴ 290 • written 16.3 years ago by ▴ 740
0
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1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 500
0
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0
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626
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
0
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2
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851
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
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0
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965
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
0
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2
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1.0k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
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2
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885
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
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0
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844
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
0
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5
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1.2k
views
gains and losses via mode shifting
CGH CGH
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 830
0
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9
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1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.8 years ago Oscar Rueda ▴ 60
0
votes
0
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707
views
snapCGH package - processCGH
CGH CGH
15.8 years ago Henrique Proença ▴ 80
0
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1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
975
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
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0
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1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
50 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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