Showing : cheminformatics • reset
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Comparing compounds in CheminneR
Cheminformatics ChemmineR ChemmineDrugs
2.2 years ago Sean • 0
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1.3k
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ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf ChemmineOB Cheminformatics ChemmineR
4.2 years ago adelenelai • 0
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1.2k
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Where can I locate the bioassayR database?
bioassayr chemmineR cheminformatics
6.7 years ago • updated 6.6 years ago Anthony Nash ▴ 20
3
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma edger deseq2 cheminformatics
updated 7.2 years ago by ★ 29k • written 7.2 years ago by • 0
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cellHTS2 importa and analysing data from chemical compound screening
cellhts2 cheminformatics
updated 8.9 years ago by ▴ 160 • written 8.9 years ago by ▴ 810
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2.3k
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Bioc 3.3 Windows 10 eiR package fails to install
software error R cheminformatics package installation eiR
updated 9.4 years ago by ▴ 10 • written 9.4 years ago by • 0
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
12.3 years ago Martin Morgan 25k
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'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization
15.7 years ago Gabriella Rustici ▴ 60
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
17.3 years ago Thomas Girke ★ 1.7k
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1.2k
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
18.1 years ago Thomas Girke ★ 1.7k
10 results • Page 1 of 1
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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