Showing : classification • reset
3
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2
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1.1k
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Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.6 years ago by 42k • written 5.6 years ago by • 0
1
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1
reply
2.3k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
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0
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Gene names in limma Venn Diagrams
Classification limma Classification limma
20.7 years ago James Wettenhall ▴ 1000
1
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5
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1.2k
views
CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
5.8 years ago Jenny.chien • 0
1
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2
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1.6k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 830
0
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0
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1.5k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
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3
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3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.5 years ago by 21k • written 11.5 years ago by ▴ 300
0
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0
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2.1k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.2 years ago Matthew Thornton ▴ 360
0
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0
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988
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Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
8.0 years ago svlachavas ▴ 830
0
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1
reply
875
views
please fix link error in your bioconductor site
Microarray Classification Microarray Classification
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ▴ 10
0
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2
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1.3k
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feature selection
Classification Classification
updated 21.2 years ago by ▴ 360 • written 21.2 years ago by ▴ 20
0
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0
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785
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short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
20.7 years ago mark@biostat.ucsf.edu ▴ 30
0
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0
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1.0k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.6 years ago Wolfgang Huber ★ 13k
0
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945
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postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
20.4 years ago Jean-Philippe Vert ▴ 10
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1.1k
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Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.1 years ago Stephen Henderson ★ 1.0k
0
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2
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1.2k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.0 years ago by ★ 1.0k • written 20.0 years ago by ▴ 180
0
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3
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1.2k
views
Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.8 years ago Gordon Smyth 50k
0
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0
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633
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rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
19.2 years ago Kuhn, Max ▴ 70
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1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
19.1 years ago Higgs, Debi ▴ 10
0
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659
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How to start?
Classification Clustering Category Classification Clustering Category
19.1 years ago Malik Yousef ▴ 40
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6
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1.2k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 40
0
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1
reply
690
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decideTests with nestedF
Classification Classification
18.8 years ago Lei Jiang ▴ 20
0
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0
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730
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decideTests with nestedF
Classification Classification
18.8 years ago Gordon Smyth 50k
0
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6
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1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
0
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0
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881
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LIMMA:nestedF in
Classification Classification
18.4 years ago Daniela Marconi ▴ 30
0
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0
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977
views
LIMMA:nestedF
Classification Classification
18.4 years ago daniela.marconi@libero.it ▴ 100
0
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0
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1.1k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.4 years ago Wolfgang Huber ★ 13k
0
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0
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910
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[RClassification on Imbalanced Data
Classification Classification
18.3 years ago portnoy@supereva.it ▴ 20
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0
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1.2k
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
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0
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1.2k
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
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0
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1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
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0
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2.0k
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PhD Position in Bioinformatics at the University Hospital Basel, Switzerland
Microarray Classification Cancer Lung Microarray Classification Cancer Lung
18.2 years ago Florent Baty ▴ 10
0
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0
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1.7k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.1 years ago Birgit Hauer ▴ 30
0
votes
2
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919
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RLMM questions
GO Classification cdf affy RLMM GO Classification cdf affy RLMM
updated 17.8 years ago by ★ 2.4k • written 17.8 years ago by ▴ 20
0
votes
0
replies
807
views
bioinformatics positions available
Classification Cancer Classification Cancer
17.7 years ago Tarca, Adi ▴ 570
0
votes
1
reply
941
views
Diagonal LDA in MLInterfaces
Classification Classification
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 90
0
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0
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786
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stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
17.5 years ago mpg33@drexel.edu ▴ 90
0
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2
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1.4k
views
Problems with Affy names / BGA
Classification affy made4 Classification affy made4
updated 17.5 years ago by ▴ 510 • written 17.5 years ago by ▴ 310
0
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0
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942
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Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray Classification Clustering Regression Microarray Classification Clustering
17.3 years ago sue@xlsolutions-corp.com ▴ 570
0
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0
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1.6k
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Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
17.2 years ago Tarca, Adi ▴ 570
0
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0
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617
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bioc-announce: vsn 2
Classification vsn Classification vsn
17.2 years ago Wolfgang Huber ★ 13k
0
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0
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1.3k
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FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.5 years ago Ana Conesa ▴ 340
0
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0
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991
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Classification Society Annual Meeting
Classification Classification
16.2 years ago William Shannon ▴ 280
0
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3
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1.0k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
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0
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1.1k
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Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
0
votes
2
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1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.7 years ago by ▴ 750 • written 15.7 years ago by ▴ 300
0
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3
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1.0k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.7 years ago Scott Ochsner ▴ 300
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago Patrick Aboyoun ★ 1.6k
0
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0
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1.5k
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Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.5 years ago Renaud Gaujoux ▴ 170
0
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0
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1.5k
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CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.2 years ago Renaud Gaujoux ▴ 170
50 results • Page 1 of 1
Recent ...
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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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