Bioconductor Coercion

Showing : coercion • reset

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3.0k

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Rsubread featurecounts coercion

4.4 years ago • updated 4.3 years ago Konstantinos Yeles ▴ 90

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1.3k

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granges coercion

7.7 years ago Malcolm Cook ★ 1.6k

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2.2k

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genomicranges RaggedExperiment coercion logical factor

updated 7.9 years ago by Marcel Ramos 700 • written 8.0 years ago by Taran • 0

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1.6k

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s4 coercion iranges integerlist

9.2 years ago jian_liangli • 0

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2.3k

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coercion data manipulation s4vectors List

9.3 years ago Jurat Shahidin ▴ 80

5 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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