Bioconductor Coldata

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750

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DESeq2 design coldata

updated 8 months ago by swbarnes2 ★ 1.4k • written 8 months ago by arfranco ▴ 130

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851

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ColData pheatmap DESeq2

written 18 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 22 months ago by Basti ▴ 780 • written 22 months ago by achoppe ▴ 10

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740

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BiSeq Coldata

4.6 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by ariel ▴ 20

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47k

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deseq2 coldata

updated 6.1 years ago by swbarnes2 ★ 1.4k • written 6.2 years ago by mjrarcher ▴ 10

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3.6k

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variantannotation coldata

updated 6.3 years ago by Valerie Obenchain ★ 6.8k • written 6.3 years ago by lvclark ▴ 10

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4.2k

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deseq2 coldata NA

updated 4 months ago by Michael Love 43k • written 6.4 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.1 years ago by Levi Waldron ★ 1.1k • written 7.1 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k

See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…

Comment: Want numbers in DESeq to be seen as numerical, not categorical by swbarnes2 ★ 1.4k

How did you import the data? Did you accidently leave in `stringAsFactors=True`? But I'm not entirely sure that you don't want that to be…

Comment: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.

Answer: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…

Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0

Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…

Votes

Comment: Theoretical WGCNA Question

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a

Comment: Comparing different method for DESEQ2

Answer: How do I fix an odd voom plot in a combined dataset?

Awards • All

Scholar to Michael Love 43k