Bioconductor Coldata

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868

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DESeq2 design coldata

updated 10 months ago by swbarnes2 ★ 1.4k • written 11 months ago by arfranco ▴ 130

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985

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ColData pheatmap DESeq2

written 21 months ago by dania.khalid • 0

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1.7k

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SingleCellExperiment colData rename

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by achoppe ▴ 10

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802

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BiSeq Coldata

4.8 years ago akhaira • 0

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2.0k

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deseq2 levels factor colData

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ariel ▴ 20

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48k

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deseq2 coldata

updated 6.4 years ago by swbarnes2 ★ 1.4k • written 6.4 years ago by mjrarcher ▴ 10

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3.9k

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variantannotation coldata

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by lvclark ▴ 10

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4.4k

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.6 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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