Bioconductor Coldata

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700

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DESeq2 design coldata

updated 7 months ago by swbarnes2 ★ 1.4k • written 7 months ago by arfranco ▴ 130

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820

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ColData pheatmap DESeq2

written 17 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 21 months ago by Basti ▴ 780 • written 21 months ago by achoppe ▴ 10

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720

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BiSeq Coldata

4.5 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ariel ▴ 20

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46k

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deseq2 coldata

updated 6.0 years ago by swbarnes2 ★ 1.4k • written 6.1 years ago by mjrarcher ▴ 10

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3.6k

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variantannotation coldata

updated 6.2 years ago by Valerie Obenchain ★ 6.8k • written 6.2 years ago by lvclark ▴ 10

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4.2k

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deseq2 coldata NA

updated 3 months ago by Michael Love 43k • written 6.3 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.0 years ago by Levi Waldron ★ 1.1k • written 7.0 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Adam • 0

Hi Aaron, Thanks a lot for your help! As you mentioned, I checked my data and it is "DelayedMatrix". I don't know the detailed differe…

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k