Bioconductor Combat sva

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3.4k

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SVA combat sva leek

updated 2.9 years ago by chase.mateusiak • 0 • written 7.0 years ago by amoltej ▴ 10

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927

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combat combat sva pamr limma design matrix sva

5.6 years ago jmsendoya • 0

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820

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combat sva batch effect

5.8 years ago Fp • 0

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629

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combat sva

6.1 years ago jonellevillar • 0

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1.2k

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combat combat sva

6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40

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1.2k

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combat sva microarry Jeff leek

6.8 years ago DataFanatic ▴ 10

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886

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combat sva sva

7.0 years ago alice.anlind • 0

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1.2k

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combat sva input files

7.1 years ago arisarkar88 ▴ 40

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1.2k

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batch effect combat sva sva

7.2 years ago Ahdee ▴ 50

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952

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combat sva

7.4 years ago vinnu260 ▴ 10

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1.5k

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combat sva batch effect comba

updated 7.5 years ago by Vegard Nygaard ▴ 110 • written 7.5 years ago by amoltej ▴ 10

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2.2k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

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922

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combat sva

7.7 years ago kkwon • 0

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1.6k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by svlachavas ▴ 830

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1.2k

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SVA combat sva batch effect

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by amoltej ▴ 10

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1.8k

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

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1.1k

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combat sva sga combat batch effect

8.0 years ago John Townsend ▴ 20

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3.1k

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combat sva SVA sva ComBat batch effect

updated 8.0 years ago by W. Evan Johnson ▴ 850 • written 8.0 years ago by John Townsend ▴ 20

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2.4k

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R Combat SVA

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by nazaninhoseinkhan • 0

19 results • Page 1 of 1

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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