Bioconductor Combat sva

Showing : combat sva • reset

votes

replies

2.3k

views

svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

vote

replies

1.5k

views

combat sva batch effect comba

updated 7.5 years ago by Vegard Nygaard ▴ 110 • written 7.5 years ago by amoltej ▴ 10

votes

3.4k

views

SVA combat sva leek

updated 2.9 years ago by chase.mateusiak • 0 • written 7.0 years ago by amoltej ▴ 10

vote

1.6k

views

affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by svlachavas ▴ 830

votes

replies

3.1k

views

combat sva SVA sva ComBat batch effect

updated 8.0 years ago by W. Evan Johnson ▴ 850 • written 8.0 years ago by John Townsend ▴ 20

vote

replies

2.5k

views

R Combat SVA

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by nazaninhoseinkhan • 0

votes

1.2k

views

combat combat sva

6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40

vote

replies

1.3k

views

SVA combat sva batch effect

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by amoltej ▴ 10

votes

replies

1.2k

views

combat sva microarry Jeff leek

6.8 years ago DataFanatic ▴ 10

votes

replies

631

views

combat sva

6.1 years ago jonellevillar • 0

votes

replies

822

views

combat sva batch effect

5.9 years ago Fp • 0

votes

replies

932

views

combat combat sva pamr limma design matrix sva

5.7 years ago jmsendoya • 0

votes

replies

1.1k

views

combat sva sga combat batch effect

8.0 years ago John Townsend ▴ 20

votes

replies

1.8k

views

ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

votes

replies

925

views

combat sva

7.7 years ago kkwon • 0

votes

replies

954

views

combat sva

7.4 years ago vinnu260 ▴ 10

votes

replies

1.2k

views

batch effect combat sva sva

7.2 years ago Ahdee ▴ 50

votes

replies

1.2k

views

combat sva input files

7.2 years ago arisarkar88 ▴ 40

votes

replies

887

views

combat sva sva

7.0 years ago alice.anlind • 0

19 results • Page 1 of 1

Recent ...

Replies

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

Awards • All