Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
confounding
•
reset
1
vote
6
replies
3.1k
views
adjusting for confounding effects in edgeR
edger
confounding
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
Victoria
• 0
0
votes
0
replies
1.4k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
8.4 years ago
svlachavas
▴ 840
8
votes
3
replies
3.3k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
9.1 years ago
lanhuong
▴ 20
1
vote
9
replies
4.3k
views
LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
9.9 years ago
Loodramon
• 0
0
votes
4
replies
2.1k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
10.5 years ago
Aileen Bahl
▴ 10
5 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards
• All
Popular Question
to
Peter
• 0
Popular Question
to
Travis
• 0
Popular Question
to
James W. MacDonald
68k
Popular Question
to
Gordon Smyth
53k
Popular Question
to
shepherl
4.2k
Locations
• All
Poland,
30 minutes ago
Denmark,
39 minutes ago
WEHI, Melbourne, Australia,
50 minutes ago
The city by the bay,
4 hours ago
United States,
6 hours ago
Traffic: 749 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6