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confounding
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adjusting for confounding effects in edgeR
edger
confounding
updated 6.4 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
Victoria
• 0
0
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0
replies
1.5k
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Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
8.6 years ago
svlachavas
▴ 840
8
votes
3
replies
3.4k
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[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
9.2 years ago
lanhuong
▴ 20
1
vote
9
replies
4.4k
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LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
10.1 years ago
Loodramon
• 0
0
votes
4
replies
2.2k
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Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
10.6 years ago
Aileen Bahl
▴ 10
5 results • Page
1 of 1
Recent ...
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Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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