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confounding
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adjusting for confounding effects in edgeR
edger
confounding
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
Victoria
• 0
0
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0
replies
1.5k
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Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
8.8 years ago
svlachavas
▴ 840
8
votes
3
replies
3.5k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
9.4 years ago
lanhuong
▴ 20
1
vote
9
replies
4.5k
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LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
10.3 years ago
Loodramon
• 0
0
votes
4
replies
2.3k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
10.8 years ago
Aileen Bahl
▴ 10
5 results • Page
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
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Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
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Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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