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confounding
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reset
1
vote
6
replies
3.2k
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adjusting for confounding effects in edgeR
edger
confounding
updated 6.4 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
Victoria
• 0
0
votes
0
replies
1.4k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
8.5 years ago
svlachavas
▴ 840
8
votes
3
replies
3.3k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
9.1 years ago
lanhuong
▴ 20
1
vote
9
replies
4.4k
views
LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
10.0 years ago
Loodramon
• 0
0
votes
4
replies
2.2k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
10.6 years ago
Aileen Bahl
▴ 10
5 results • Page
1 of 1
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Kevin Blighe
★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes
by
Kevin Blighe
★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Answer: Setting up a DESeq2 Design with Paired Data
by
Kevin Blighe
★ 4.0k
Hello, Your design formula looks mostly correct to me, but I believe that `vessel_n` should be `replicate` (or whatever unique identifie…
Comment: Failure to download resources (MeSHDb) from AnnotationHub
by
Steve Lianoglou
★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write
by
nicolas.lhuillier
• 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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