Bioconductor GSA

Showing : GSA • reset

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463

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GSEA GSA vst

updated 11 months ago by Michael Love 41k • written 11 months ago by nhaus • 0

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1.4k

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GSEA GSA

updated 5.2 years ago by Gordon Smyth 49k • written 5.2 years ago by Bogdan ▴ 670

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1.3k

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crlmm gsa microarray illumina

written 5.6 years ago by shaun • 0

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640

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GSA

5.8 years ago Seymoo • 0

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1.8k

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gsea concept gsa

updated 6.9 years ago by Pekka Kohonen ▴ 190 • written 6.9 years ago by Lluís Revilla Sancho ▴ 720

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1.3k

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GSA

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by epercamh • 0

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1.5k

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gsea gsa

updated 7.7 years ago by Axel Klenk ▴ 990 • written 7.7 years ago by Bogdan ▴ 670

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1.6k

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limma GSA confounding within-pair analysis 450k

8.6 years ago Aileen Bahl ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Gordon Smyth 49k

515 samples is certainly large enough.

Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim

Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320

Gordon said to let coef to its default value: topTable(fit, n=20)

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…

Comment: Agilent Microarray Gene Oncology analysis gone wrong by samagbeyimodupe • 0

Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…

Votes

Answer: Correct the batch effect in methylation analysis in R

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Answer: Correct the batch effect in methylation analysis in R

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

Awards • All

Scholar to Gordon Smyth 49k

Popular Question to Lluís Revilla Sancho ▴ 720

Popular Question to Frederik Ziebell ▴ 20