Bioconductor Copy number

Showing : copy number • reset

votes

replies

1.0k

views

cn.MOPS CNV copy number

5.6 years ago liorglic ▴ 10

votes

1.9k

views

copy number

8.3 years ago mms140130 • 0

votes

replies

980

views

cghcall r cgh copy number

8.4 years ago kitcurtius • 0

vote

1.7k

views

bioconductor ChAMP copy number batch effect normalization

updated 8.6 years ago by rasmus.rydbirk ▴ 10 • written 8.6 years ago by apmishra • 0

votes

replies

1.3k

views

ChAMP champ copy number

8.7 years ago apmishra • 0

votes

replies

3.3k

views

CopywriteR copy number

updated 9.6 years ago by t.kuilman ▴ 170 • written 9.7 years ago by smcnulty • 0

votes

replies

1.2k

views

crlmm copy number

10.5 years ago kforner • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Awards • All