Bioconductor Copy number

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939

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cn.MOPS CNV copy number

5.1 years ago liorglic ▴ 10

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1.8k

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copy number

7.7 years ago mms140130 • 0

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923

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cghcall r cgh copy number

7.8 years ago kitcurtius • 0

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1.5k

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bioconductor ChAMP copy number batch effect normalization

updated 8.0 years ago by rasmus.rydbirk ▴ 10 • written 8.0 years ago by apmishra • 0

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1.2k

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ChAMP champ copy number

8.1 years ago apmishra • 0

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3.0k

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CopywriteR copy number

updated 9.0 years ago by t.kuilman ▴ 170 • written 9.1 years ago by smcnulty • 0

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1.1k

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crlmm copy number

10.0 years ago kforner • 0

7 results • Page 1 of 1

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

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Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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