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fer_talavera
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fer_talavera
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written 2.5 years ago by
Joshua
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updated 4.0 years ago by
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written 4.0 years ago by
Ram
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updated 5.6 years ago by
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written 5.6 years ago by
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updated 6.0 years ago by
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written 6.0 years ago by
TriS
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written 6.8 years ago by
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updated 7.1 years ago by
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written 7.1 years ago by
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7.8 years ago
Tom
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MatthewGField
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
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0
Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
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I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
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Michael Love
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But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
•
0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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ATpoint
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4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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