Bioconductor Curl

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813

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pathview SSL curl

15 months ago Matthias • 0

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1.9k

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biomaRt curl timeout getBM Bioconductor

updated 3.2 years ago by swbarnes2 ★ 1.4k • written 3.2 years ago by nlin0907 • 0

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11k

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curl biomart getBM Tutorial

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by Ni-Ar ▴ 10

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2.6k

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biomaRt curl

5.1 years ago fca.collin • 0

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2.8k

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biomart ensembl curl

updated 6.9 years ago by Mike Smith ★ 6.6k • written 6.9 years ago by Tiphaine Martin ▴ 40

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2.1k

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Annotationhub curl httr fedora

updated 8.5 years ago by anastazie.d ▴ 30 • written 9.2 years ago by barashe ▴ 10

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k