Biostar HELP

Showing : HELP • reset

vote

replies

197

views

HELP ChIPpeakAnno

9 weeks ago lexi.kellington • 0

vote

replies

930

views

help DESeq2 DESeqDataSetFromMatrix rownames

updated 9 months ago by Kevin Blighe 3.4k • written 9 months ago by dorina.jamniczky • 0

votes

replies

427

views

RNASeqData RNASeq GEO RNASeqR HELP

9 months ago hgalmoore • 0

votes

1.2k

views

help software error

updated 3.0 years ago by Martin Morgan 25k • written 3.0 years ago by mafusa20 • 0

votes

replies

454

views

limma time series help

updated 3.0 years ago by Aaron Lun ★ 27k • written 3.0 years ago by rm1238 • 0

vote

replies

3.6k

views

clusterprofiler input files error help

updated 4.9 years ago by Guangchuang Yu ★ 1.2k • written 4.9 years ago by Mataivic • 0

votes

replies

1.8k

views

edger differential gene expression without replicate nested design help

updated 5.6 years ago by Aaron Lun ★ 27k • written 5.6 years ago by knipehf • 0

votes

replies

858

views

R deseq2 differential gene expression help

5.6 years ago fischer87 • 0

votes

replies

808

views

limma help

updated 6.1 years ago by svlachavas ▴ 780 • written 6.1 years ago by libya.tahani • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k

Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…

Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20

Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…

Answer: submitting a BSgenome package by deisianyufg • 0

From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…

Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970

Is the one plot a mirror image of the other?

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k

hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…

Votes

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between

Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))

Comment: submitting a BSgenome package

Answer: rlog vs vst for outlier identification

Answer: DESeq2 median of ratios normalization for signature score calculation

Awards • All