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Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3 months ago
michela
▴ 20
3
votes
4
replies
430
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3 months ago by
James W. MacDonald
62k • written 3 months ago by
michela
▴ 20
0
votes
10
replies
561
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
3 months ago
michela
▴ 20
0
votes
1
reply
216
views
Data visualization
HELP
Data
updated 5 months ago by
Guido Hooiveld
★ 3.5k • written 5 months ago by
mcclurejenniferc
• 0
1
vote
1
reply
729
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 11 months ago by
damian.szk
▴ 70 • written 11 months ago by
Jessica
▴ 10
1
vote
2
replies
1.1k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
14 months ago
lexi.kellington
• 0
1
vote
9
replies
2.2k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 8 months ago by
Sanatan
• 0 • written 21 months ago by
dorina.jamniczky
• 0
3
votes
4
replies
802
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
22 months ago
hgalmoore
• 0
0
votes
1
reply
1.6k
views
setup microbiome error
help
software error
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
mafusa20
• 0
0
votes
2
replies
687
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
rm1238
• 0
1
vote
4
replies
4.5k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 5.9 years ago by
Guangchuang Yu
★ 1.2k • written 5.9 years ago by
Mataivic
• 0
4
votes
5
replies
2.0k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
knipehf
• 0
0
votes
7
replies
1.2k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
6.6 years ago
fischer87
• 0
0
votes
2
replies
983
views
help me to analysis my data
limma
help
updated 7.2 years ago by
svlachavas
▴ 800 • written 7.2 years ago by
libya.tahani
• 0
14 results • Page
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Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user)
by
beatriz.calvo
▴ 30
Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Answer: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
You cannot use `mas5calls` on a miRNA-4_0 array. There are no MM probes on that array, so it is not possible to get MAS-5.0 calls, because …
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
As mentioned before, this answer did not help me.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
shepherl
3.4k
Please see related post: https://support.bioconductor.org/p/66664/
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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