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HELP
•
reset
0
votes
5
replies
1.2k
views
Bioconductor unable to update 'curl'
curl
HELP
10 months ago
kagodwi2
• 0
0
votes
2
replies
1.1k
views
iam not able to do retrive data using GEOquery R package
HELP
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
ramya20kumar20
• 0
0
votes
9
replies
2.5k
views
'path' must be string
HELP
path
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
cpierce2
• 0
0
votes
1
reply
832
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.5 years ago by
DrFizz
• 0 • written 2.5 years ago by
melander
• 0
2
votes
6
replies
2.7k
views
Help me find the bug
DESeq2
HELP
3.0 years ago
Michael
• 0
0
votes
4
replies
2.8k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
Michael
• 0
0
votes
2
replies
1.2k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.3 years ago
michela
▴ 20
3
votes
4
replies
1.9k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3.3 years ago by
James W. MacDonald
68k • written 3.3 years ago by
michela
▴ 20
0
votes
10
replies
2.8k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
3.3 years ago
michela
▴ 20
0
votes
1
reply
1.1k
views
Data visualization
HELP
Data
updated 3.4 years ago by
Guido Hooiveld
★ 4.1k • written 3.4 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
3.4k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 3.0 years ago by
Rodrigo
▴ 10 • written 4.0 years ago by
Jessica
▴ 10
1
vote
2
replies
3.6k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
4.2 years ago
lexi.kellington
• 0
1
vote
9
replies
7.5k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 3.7 years ago by
Sanatan
• 0 • written 4.8 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
2.4k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.9 years ago • updated 4.8 years ago
hgalmoore
• 0
0
votes
1
reply
2.7k
views
setup microbiome error
help
software error
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
mafusa20
• 0
0
votes
2
replies
1.6k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
rm1238
• 0
1
vote
4
replies
8.2k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Mataivic
• 0
4
votes
5
replies
3.2k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 9.6 years ago by
Aaron Lun
★ 29k • written 9.6 years ago by
knipehf
• 0
0
votes
7
replies
2.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
9.6 years ago
fischer87
• 0
0
votes
2
replies
1.8k
views
help me to analysis my data
limma
help
updated 10.2 years ago by
svlachavas
▴ 840 • written 10.2 years ago by
libya.tahani
• 0
20 results • Page
1 of 1
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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