Biostar HELP

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

3 months ago michela ▴ 20

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430

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HELP HelloRanges

updated 3 months ago by James W. MacDonald 62k • written 3 months ago by michela ▴ 20

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561

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HELP ChIC.data PeakDetection ChipOnChipData

3 months ago michela ▴ 20

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216

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HELP Data

updated 5 months ago by Guido Hooiveld ★ 3.5k • written 5 months ago by mcclurejenniferc • 0

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729

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STRINGdb HELP

updated 11 months ago by damian.szk ▴ 70 • written 11 months ago by Jessica ▴ 10

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1.1k

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HELP ChIPpeakAnno

14 months ago lexi.kellington • 0

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2.2k

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 8 months ago by Sanatan • 0 • written 21 months ago by dorina.jamniczky • 0

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802

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RNASeqData RNASeq GEO RNASeqR HELP

22 months ago hgalmoore • 0

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1.6k

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help software error

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by mafusa20 • 0

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687

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limma time series help

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by rm1238 • 0

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4.5k

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clusterprofiler input files error help

updated 5.9 years ago by Guangchuang Yu ★ 1.2k • written 5.9 years ago by Mataivic • 0

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2.0k

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edger differential gene expression without replicate nested design help

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by knipehf • 0

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1.2k

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R deseq2 differential gene expression help

6.6 years ago fischer87 • 0

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983

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limma help

updated 7.2 years ago by svlachavas ▴ 800 • written 7.2 years ago by libya.tahani • 0

14 results • Page 1 of 1

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Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Comment: Atena package - error (new user) by beatriz.calvo ▴ 30

Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …

Answer: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

You cannot use `mas5calls` on a miRNA-4_0 array. There are no MM probes on that array, so it is not possible to get MAS-5.0 calls, because …

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

As mentioned before, this answer did not help me.

Comment: mas5calls function doesn't work; mirna40cdf problem by shepherl 3.4k

Please see related post: https://support.bioconductor.org/p/66664/

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k