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database
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Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein
database
glutathionylation
PTM
2.8 years ago
Camelia
• 0
1
vote
7
replies
3.1k
views
How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
3.1 years ago
tpm
• 0
1
vote
1
reply
476
views
can i get the database of bioconductor?
database
4.6 years ago
jsdh120707
• 0
0
votes
0
replies
1.1k
views
Job:
Computational Biology/Bioinformatics Post-doctoral position, Johns Hopkins University, Baltimore, USA
rnaseq
next-generation sequencing
database
Job
6.4 years ago
cleo.k.yang
• 0
0
votes
3
replies
1.3k
views
error while making database using Annotationforge package
annotationforge
error
database
updated 7.8 years ago by
Guido Hooiveld
★ 3.9k • written 7.8 years ago by
kritikamish99
▴ 10
0
votes
0
replies
888
views
setting database.path for extracting PSSM Feature in BioSeqClass
bioseqclass
pssm
database
featurepssm
feature
8.6 years ago
greensandag
• 0
2
votes
1
reply
1.2k
views
Update database names in the biomaRT package
biomaRT
database
updated 9.2 years ago by
Julian Gehring
★ 1.3k • written 9.2 years ago by
aspadotto
▴ 20
7 results • Page
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Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM()
by
mat149
▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Answer: Store output of matchPWM()
by
James W. MacDonald
65k
Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …
Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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