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updated 11.0 years ago by
Dan Tenenbaum
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written 11.0 years ago by
hpw9
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Answer: When to use edgeR or limma
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Gordon Smyth
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
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Gordon Smyth
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I updated the above answer today.
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
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mohammedtoufiq91
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@gordonsmyth Noted, thank you very much.
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