Bioconductor Degreport

Showing : degreport • reset

votes

576

views

limma DEGreport Volcanoplot

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Mohammad • 0

vote

replies

1.6k

views

BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by Diya • 0

vote

1.6k

views

DEGreport deseq2

updated 5.1 years ago by Lorena Pantano ▴ 120 • written 5.1 years ago by lqsdau ▴ 10

vote

replies

882

views

DEGreport

updated 4.0 years ago by Lorena Pantano ▴ 120 • written 4.0 years ago by kavator ▴ 30

votes

replies

9.1k

views

DEGreport DegPlot

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by kavator ▴ 30

votes

replies

923

views

RNASeqData DEGreport edgeR

3.2 years ago Wuschel ▴ 10

votes

replies

3.3k

views

DESeq2 RNASeq DEGreport

updated 17 months ago by Michael Love 41k • written 3.1 years ago by Giulia ▴ 10

vote

replies

2.9k

views

DEGreport

updated 8 months ago by James W. MacDonald 65k • written 19 months ago by marinaw ▴ 20

votes

replies

2.4k

views

DEGreport

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by kavator ▴ 30

votes

replies

848

views

DEGseq clusterProfiler DEGreport

17 months ago Rob • 0

10 results • Page 1 of 1

Recent ...

Replies

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Awards • All