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dese
•
reset
2
votes
2
replies
579
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
6 months ago
BioinfGuru
▴ 70
0
votes
1
reply
410
views
collapseReplicates dimension error
DESeq2
Dese
updated 11 months ago by
Michael Love
43k • written 11 months ago by
Léa
• 0
0
votes
3
replies
584
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 12 months ago by
Xu
• 0
0
votes
2
replies
598
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
13 months ago
pl23
• 0
0
votes
2
replies
892
views
Linear Model Fitting and Colinearity
dese
DESeq2
15 months ago • updated 14 months ago
Hugo
• 0
0
votes
5
replies
1.2k
views
DESeq2 analysis
DESe
DESeq2
19 months ago
Adèle
• 0
0
votes
2
replies
1.9k
views
Handling NA's in Deseq2
Dese
DESeq2
21 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.7k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 22 months ago by
Michael Love
43k • written 22 months ago by
Alina
• 0
4
votes
5
replies
1.9k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 9 months ago by
ij283
• 0 • written 23 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.2k
views
Merging two plated in R
dese
DESeq2
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.1 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
822
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
hpapoli
• 0
16 results • Page
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Replies
Comment: Using tximport for kallisto aligned recount2 data
by
ATpoint
★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
by
Yao Lipu
• 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Answer: Surprising behavior for DEXseq dispersion estimate plot?
by
Snow
• 0
Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…
Answer: library org.Hs.eg.db failing to install
by
James W. MacDonald
68k
It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
Elijah
• 0
Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…
Votes
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
A: WGCNA sample size minimum: why?
WGCNA sample size minimum: why?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
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