Showing : dese • reset
2
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq DESeq2 dese
15 months ago BioinfGuru ▴ 70
0
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599
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collapseReplicates dimension error
DESeq2 Dese
updated 20 months ago by 43k • written 20 months ago by • 0
0
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3
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760
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DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
written 21 months ago by • 0
0
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2
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851
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
22 months ago pl23 • 0
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1.2k
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Linear Model Fitting and Colinearity
dese DESeq2
23 months ago Hugo • 0
0
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5
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1.4k
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DESeq2 analysis
DESe DESeq2
2.3 years ago Adèle • 0
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2
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2.3k
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Handling NA's in Deseq2
Dese DESeq2
2.5 years ago Asger Mølgaard • 0
2
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17
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3.4k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
4
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5
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2.2k
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 17 months ago by • 0 • written 2.6 years ago by ▴ 10
3
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3
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1.3k
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Merging two plated in R
dese DESeq2
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 10
0
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5
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4.7k
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 3.5 years ago by ▴ 780 • written 3.5 years ago by • 0
1
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3
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2.0k
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
3.8 years ago aedavids ▴ 20
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2
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1.2k
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DESeq2 ratio of ratios and p-value
DESeq2 dese
4.1 years ago wilfried.guiblet • 0
0
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2
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950
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
2
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3
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1.4k
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Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
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2
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1.4k
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Effect of within-group variation on gene expression analysis
DESeq2
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
16 results • Page 1 of 1
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Comment: Large logFC but somewhat high FDR by JKim • 0
Well I got duplicate FDRs. For those wondering why there are duplicate adjusted p-values, see [p.adjust BH generates duplicate values][1] …
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by ATpoint ★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR by JKim • 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release by andres.wokaty ▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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