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deseq
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1
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2
replies
348
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evaluate the variable importance on genes
DESeq2
deseq
12 weeks ago
Meme
• 0
0
votes
2
replies
353
views
Running DESeq on normalized data
deseq
DESeq2
updated 5 months ago by
ATpoint
★ 4.1k • written 5 months ago by
Hugo
• 0
2
votes
2
replies
546
views
Predicting missing values splines DESeq2
deseq
DESeq2
6 months ago
georgii.vdovin
• 0
0
votes
1
reply
401
views
Controling for Covariates With a Continuous Predictor Variable
Deseq
DESeq2
updated 6 months ago by
Michael Love
42k • written 6 months ago by
georgii.vdovin
• 0
0
votes
1
reply
685
views
Can I transform already normalized rna-seq data with Z-score?
Z-score
RNASeqData
Deseq
DESeq2
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
khaserdene99
• 0
0
votes
3
replies
991
views
Difference between DESeqDataSetFromMatrix() function and DESeq() function
DESeq
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Abir.khazaal
▴ 10
0
votes
4
replies
675
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 10 months ago by
Michael Love
42k • written 10 months ago by
Ndimensional
▴ 20
6
votes
11
replies
26k
views
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq
deseq2
updated 9 months ago by
Erika
• 0 • written 9.3 years ago by
c.lieftink@nki.nl
▴ 40
8 results • Page
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Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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