Bioconductor Deseq2

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DESeq2 celda

updated 42 minutes ago by ATpoint ★ 4.0k • written 13 hours ago by JalapenoCornbread • 0

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236

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 13 hours ago by James W. MacDonald 65k • written 21 hours ago by Alexandre • 0

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DESeq2 PCAtools

updated 19 hours ago by JKim • 0 • written 1 day ago by Aaliya • 0

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DESeq2 RNAseq

updated 1 day ago by Michael Love 41k • written 1 day ago by kcarey • 0

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103

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DESeq2

updated 1 day ago by Michael Love 41k • written 2 days ago by andrebolerbarros ▴ 20

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143

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DESeq2

2 days ago • updated 2 hours ago winwater0928 • 0

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214

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DESeq2

updated 2 days ago by Michael Love 41k • written 2 days ago by i.sudbery ▴ 40

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235

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DESeq2 RSTUDIO PCAtools

updated 1 day ago by swbarnes2 ★ 1.3k • written 2 days ago by Aaliya • 0

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171

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DESeq2

updated 2 days ago by Michael Love 41k • written 3 days ago by WardDeb • 0

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199

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DiffBind DESeq2 ATACSeq

8 days ago • updated 6 days ago lonn • 0

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220

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DESeq2

15 days ago • updated 6 days ago Weiqian ▴ 10

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230

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DESeq2

updated 6 days ago by Michael Love 41k • written 11 days ago by Rajat • 0

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387

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DESeq2

updated 6 days ago by Michael Love 41k • written 10 weeks ago by Emma • 0

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2.3k

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deseq2

updated 2 days ago by Michael Love 41k • written 4.6 years ago by hsbio ▴ 10

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700

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DESeq2

updated 6 days ago by Michael Love 41k • written 5.0 years ago by Merlin ▴ 10

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0