Showing : deseq2 • reset
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DESeq2- Mysterious interaction suppresses DEGs
DESeq2 PCAplot RNA-Seq DesignModel
14 hours ago • updated 13 hours ago shaunpeterson • 0
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated 2 hours ago by • 0 • written 21 hours ago by • 0
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 1 day ago by ★ 4.1k • written 2 days ago by • 0
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Assymetric MA plot with no overall trend
DESeq2 DifferentialExpression
updated 2 days ago by 42k • written 3 days ago by • 0
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normalization across different species for DESeq2 analysis
DESeq2 normalization Normalization acrossspecies
updated 3 days ago by 42k • written 4 days ago by • 0
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Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2 pcaExplorer
updated 3 days ago by ▴ 30 • written 4 days ago by • 0
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
4 days ago • updated 1 day ago BioinfGuru ▴ 30
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deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
9 days ago • updated 6 days ago sajadahmad41454 • 0
8 results • Page 1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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