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diffsplice
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1
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2
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839
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Selecting pairs of exons from differentially spliced genes
diffSplice
limma
2.8 years ago • updated 2.7 years ago
jamie.gearing
▴ 60
2
votes
3
replies
758
views
Reasoning behind weighting of of exon expression values in limma diffSplice function
limma
diffSplice
updated 3.6 years ago by
Gordon Smyth
50k • written 3.6 years ago by
gerberst
• 0
1
vote
3
replies
1.4k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
relathman
▴ 20
5
votes
2
replies
1.2k
views
Warning messages from diffSplice in Limma
limma
diffSplice
updated 7.0 years ago by
Gordon Smyth
50k • written 7.0 years ago by
willj
▴ 30
15
votes
6
replies
3.2k
views
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR
limma
diffSplice
DEXSeq
updated 7.7 years ago by
Charity Law
▴ 90 • written 7.7 years ago by
maltethodberg
▴ 170
0
votes
0
replies
1.1k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.7 years ago
Jose M Garcia Manteiga
▴ 310
6 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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