Bioconductor Hta2.0

Showing : hta2.0 • reset

votes

replies

410

views

hta20transcriptcluster.db org.Sc.sgd.db HTA2.0 MicroRNAArrayData

10 weeks ago Yao Lipu • 0

votes

replies

1.4k

views

HTA2.0 microarray affy r

4.7 years ago • updated 4.6 years ago Marco_aurelio • 0

votes

replies

1.7k

views

affy rna hta2.0 r

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by Marco_aurelio • 0

vote

replies

1.8k

views

oligo HTA2.0 affycoretools RMA fitProbeLevelModel

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by Guido Hooiveld ★ 4.1k

votes

replies

1.5k

views

microarray hta2.0 arrayqualitymetrics

updated 6.4 years ago by Mike Smith ★ 6.6k • written 6.4 years ago by RV ▴ 10

votes

replies

2.6k

views

hta2.0 annotation transcripts

updated 6.7 years ago by svlachavas ▴ 840 • written 6.7 years ago by Biomed • 0

votes

replies

2.4k

views

microarray scan.upc hta2.0

updated 7.4 years ago by Stephen Piccolo ▴ 600 • written 7.4 years ago by Lukas__ • 0

vote

replies

1.7k

views

differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by relathman ▴ 20

votes

replies

1.8k

views

pd.hta.2.0 hta2.0 affycoretools

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by relathman ▴ 20

votes

replies

3.4k

views

hta2.0 transcripts

7.7 years ago giroudpaul ▴ 40

votes

replies

1.3k

views

affxparser cdf hta2.0

7.9 years ago relathman ▴ 20

votes

replies

1.5k

views

hta2.0 limma batch effect affymetrix microarrays ComBat

8.0 years ago svlachavas ▴ 840

votes

replies

1.9k

views

oligo hta2.0 affymetrix microarrays memory problem

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by svlachavas ▴ 840

votes

replies

3.8k

views

oligo affycoretools hta2.0 affymetrix

updated 3.0 years ago by Yang Shi ▴ 10 • written 8.1 years ago by svlachavas ▴ 840

votes

replies

1.1k

views

affyPLM fitPLM hta2.0

8.7 years ago Guido Hooiveld ★ 4.1k

15 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Awards • All

Scholar to James W. MacDonald 68k