Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

21 months ago robjohn70000 • 0

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1.1k

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GenomicRanges GenomicFeatures grange distanceToNearest R

5.9 years ago rmash ▴ 20

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1.5k

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GenomicRanges distancetonearest strandedness

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by shraddha.pai • 0

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1.7k

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GRanges distancetonearest

updated 7.8 years ago by Julie Zhu ★ 4.3k • written 7.8 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

7.9 years ago rbronste ▴ 60

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2.8k

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genomicranges DistanceToNearest

updated 9.1 years ago by Valerie Obenchain ★ 6.8k • written 9.1 years ago by roladali ▴ 20

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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