Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

13 months ago robjohn70000 • 0

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GenomicRanges GenomicFeatures grange distanceToNearest R

5.3 years ago rmash ▴ 20

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GenomicRanges distancetonearest strandedness

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by shraddha.pai • 0

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GRanges distancetonearest

updated 7.2 years ago by Julie Zhu ★ 4.3k • written 7.2 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

7.3 years ago rbronste ▴ 60

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genomicranges DistanceToNearest

updated 8.4 years ago by Valerie Obenchain ★ 6.8k • written 8.5 years ago by roladali ▴ 20

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> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

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This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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