Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

2.0 years ago robjohn70000 • 0

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GenomicRanges GenomicFeatures grange distanceToNearest R

6.2 years ago rmash ▴ 20

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GenomicRanges distancetonearest strandedness

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by shraddha.pai • 0

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GRanges distancetonearest

updated 8.1 years ago by Julie Zhu ★ 4.3k • written 8.1 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

8.2 years ago rbronste ▴ 60

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genomicranges DistanceToNearest

updated 9.4 years ago by Valerie Obenchain ★ 6.8k • written 9.4 years ago by roladali ▴ 20

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

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Popular Question to mohammedtoufiq91 ▴ 10

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Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20