Bioconductor Distancetonearest

Showing : distancetonearest • reset

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1.3k

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rtracklayer ranges distanceToNearest

22 months ago robjohn70000 • 0

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1.1k

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GenomicRanges GenomicFeatures grange distanceToNearest R

6.0 years ago rmash ▴ 20

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1.5k

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GenomicRanges distancetonearest strandedness

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by shraddha.pai • 0

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1.7k

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GRanges distancetonearest

updated 7.9 years ago by Julie Zhu ★ 4.3k • written 7.9 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

8.0 years ago rbronste ▴ 60

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2.9k

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genomicranges DistanceToNearest

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by roladali ▴ 20

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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