Bioconductor Distancetonearest

Showing : distancetonearest • reset

votes

replies

893

views

rtracklayer ranges distanceToNearest

10 months ago robjohn70000 • 0

votes

replies

928

views

GenomicRanges GenomicFeatures grange distanceToNearest R

5.0 years ago rmash ▴ 20

votes

1.3k

views

GenomicRanges distancetonearest strandedness

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by shraddha.pai • 0

votes

replies

1.4k

views

GRanges distancetonearest

updated 6.9 years ago by Julie Zhu ★ 4.3k • written 7.0 years ago by chitsazanalex ▴ 10

votes

replies

4.9k

views

chipenrich granges distancetonearest function dataframe

7.0 years ago rbronste ▴ 60

vote

replies

2.2k

views

genomicranges DistanceToNearest

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.2 years ago by roladali ▴ 20

6 results • Page 1 of 1

Recent ...

Replies

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20