Bioconductor Dmrseq

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1.8k

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dmrseq bsseq

21 months ago • updated 20 months ago Juan Higareda • 0

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886

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dmrseq

updated 2.3 years ago by keegan ▴ 60 • written 2.7 years ago by giancarlo.castellano • 0

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1.2k

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dmrseq

updated 4.8 years ago by keegan ▴ 60 • written 4.9 years ago by KIR_F • 0

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1.4k

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methylCC deconvolution methylation dmrseq serum

5.8 years ago marcin.bazyliszek • 0

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1.1k

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dmrseq methylation

6.2 years ago sorjuelal • 0

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1.2k

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dmrseq

6.5 years ago Stephanie Hicks ▴ 80

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2.2k

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dmrseq sva DSS

updated 6.6 years ago by keegan ▴ 60 • written 6.6 years ago by gjl ▴ 10

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2.4k

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dmrseq Methylation

updated 6.6 years ago by keegan ▴ 60 • written 6.6 years ago by sorjuelal • 0

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2.0k

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installation problem dmrseq bumphunter

updated 7.2 years ago by shepherl 4.3k • written 7.2 years ago by guy.bioinfo ▴ 10

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3.3k

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dmrseq

updated 7.2 years ago by keegan ▴ 60 • written 7.3 years ago by kuckunniwid • 0

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1.5k

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dmrseq

updated 7.4 years ago by keegan ▴ 60 • written 7.4 years ago by swebb1 • 0

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1.8k

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dmrseq bsseq

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Bruno Verstraeten • 0

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2.1k

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dmrseq dmr dmrs bisulfite methylation

updated 7.9 years ago by keegan ▴ 60 • written 8.0 years ago by l.kremer • 0

13 results • Page 1 of 1

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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