Bioconductor Dmrseq

Showing : dmrseq • reset

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1.9k

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dmrseq bsseq

22 months ago • updated 21 months ago Juan Higareda • 0

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904

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dmrseq

updated 2.4 years ago by keegan ▴ 60 • written 2.8 years ago by giancarlo.castellano • 0

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1.2k

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dmrseq

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by KIR_F • 0

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1.4k

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methylCC deconvolution methylation dmrseq serum

5.8 years ago marcin.bazyliszek • 0

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1.1k

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dmrseq methylation

6.3 years ago sorjuelal • 0

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1.2k

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dmrseq

6.5 years ago Stephanie Hicks ▴ 80

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2.2k

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dmrseq sva DSS

updated 6.6 years ago by keegan ▴ 60 • written 6.7 years ago by gjl ▴ 10

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dmrseq Methylation

updated 6.6 years ago by keegan ▴ 60 • written 6.6 years ago by sorjuelal • 0

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2.0k

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installation problem dmrseq bumphunter

updated 7.3 years ago by shepherl 4.3k • written 7.3 years ago by guy.bioinfo ▴ 10

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3.4k

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dmrseq

updated 7.3 years ago by keegan ▴ 60 • written 7.3 years ago by kuckunniwid • 0

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1.5k

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dmrseq

updated 7.5 years ago by keegan ▴ 60 • written 7.5 years ago by swebb1 • 0

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1.8k

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dmrseq bsseq

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Bruno Verstraeten • 0

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2.1k

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dmrseq dmr dmrs bisulfite methylation

updated 8.0 years ago by keegan ▴ 60 • written 8.0 years ago by l.kremer • 0

13 results • Page 1 of 1

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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