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dmrseq
•
reset
4
votes
9
replies
1.7k
views
Memory errors using read.bismark?
dmrseq
bsseq
20 months ago • updated 19 months ago
Juan Higareda
• 0
0
votes
1
reply
866
views
dmrseq and polymorphisms
dmrseq
updated 2.2 years ago by
keegan
▴ 60 • written 2.6 years ago by
giancarlo.castellano
• 0
0
votes
1
reply
1.1k
views
dmrseq on a subset of genomic regions
dmrseq
updated 4.7 years ago by
keegan
▴ 60 • written 4.8 years ago by
KIR_F
• 0
0
votes
0
replies
1.4k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
5.6 years ago
marcin.bazyliszek
• 0
0
votes
1
reply
1.1k
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq
methylation
6.1 years ago
sorjuelal
• 0
0
votes
1
reply
1.1k
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
6.3 years ago
Stephanie Hicks
▴ 80
1
vote
1
reply
2.1k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 6.5 years ago by
keegan
▴ 60 • written 6.5 years ago by
gjl
▴ 10
1
vote
4
replies
2.4k
views
dmrseq error: promise already under evaluation??
dmrseq
Methylation
updated 6.5 years ago by
keegan
▴ 60 • written 6.5 years ago by
sorjuelal
• 0
6
votes
5
replies
2.0k
views
dmrseq installation failed
installation problem
dmrseq
bumphunter
updated 7.1 years ago by
shepherl
4.2k • written 7.1 years ago by
guy.bioinfo
▴ 10
3
votes
16
replies
3.3k
views
Internal bug of DMR-Seq?
dmrseq
updated 7.1 years ago by
keegan
▴ 60 • written 7.2 years ago by
kuckunniwid
• 0
0
votes
3
replies
1.4k
views
DMRseq smoothed values
dmrseq
updated 7.3 years ago by
keegan
▴ 60 • written 7.3 years ago by
swebb1
• 0
0
votes
3
replies
1.7k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Bruno Verstraeten
• 0
2
votes
2
replies
2.0k
views
dmrseq: cannot adjust for a covariate
dmrseq
dmr
dmrs
bisulfite
methylation
updated 7.8 years ago by
keegan
▴ 60 • written 7.9 years ago by
l.kremer
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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