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dmrseq
•
reset
4
votes
9
replies
1.3k
views
Memory errors using read.bismark?
dmrseq
bsseq
11 months ago • updated 10 months ago
Juan Higareda
• 0
0
votes
1
reply
707
views
dmrseq and polymorphisms
dmrseq
updated 18 months ago by
keegan
▴ 60 • written 23 months ago by
giancarlo.castellano
• 0
0
votes
1
reply
991
views
dmrseq on a subset of genomic regions
dmrseq
updated 4.0 years ago by
keegan
▴ 60 • written 4.1 years ago by
KIR_F
• 0
0
votes
0
replies
1.2k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
5.0 years ago
marcin.bazyliszek
• 0
0
votes
1
reply
953
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq
methylation
5.4 years ago
sorjuelal
• 0
0
votes
1
reply
973
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
5.7 years ago
Stephanie Hicks
▴ 80
1
vote
1
reply
1.8k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 5.8 years ago by
keegan
▴ 60 • written 5.8 years ago by
gjl
▴ 10
1
vote
4
replies
2.1k
views
dmrseq error: promise already under evaluation??
dmrseq
Methylation
updated 5.8 years ago by
keegan
▴ 60 • written 5.8 years ago by
sorjuelal
• 0
6
votes
5
replies
1.7k
views
dmrseq installation failed
installation problem
dmrseq
bumphunter
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
guy.bioinfo
▴ 10
3
votes
16
replies
2.7k
views
Internal bug of DMR-Seq?
dmrseq
updated 6.4 years ago by
keegan
▴ 60 • written 6.5 years ago by
kuckunniwid
• 0
0
votes
3
replies
1.2k
views
DMRseq smoothed values
dmrseq
updated 6.6 years ago by
keegan
▴ 60 • written 6.6 years ago by
swebb1
• 0
0
votes
3
replies
1.5k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
Bruno Verstraeten
• 0
2
votes
2
replies
1.8k
views
dmrseq: cannot adjust for a covariate
dmrseq
dmr
dmrs
bisulfite
methylation
updated 7.1 years ago by
keegan
▴ 60 • written 7.2 years ago by
l.kremer
• 0
13 results • Page
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Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…
Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
wuwenhui2
• 0
Thanks, I figured it out.
Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati
by
Mei
• 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Arctic
• 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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