Bioconductor Dmrseq

Showing : dmrseq • reset

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1.1k

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dmrseq bsseq

9 months ago • updated 8 months ago Juan Higareda • 0

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678

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dmrseq

updated 16 months ago by keegan ▴ 60 • written 21 months ago by giancarlo.castellano • 0

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937

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dmrseq

updated 3.8 years ago by keegan ▴ 60 • written 3.9 years ago by KIR_F • 0

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1.1k

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methylCC deconvolution methylation dmrseq serum

4.8 years ago marcin.bazyliszek • 0

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893

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dmrseq methylation

5.3 years ago sorjuelal • 0

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918

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dmrseq

5.5 years ago Stephanie Hicks ▴ 80

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1.7k

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dmrseq sva DSS

updated 5.6 years ago by keegan ▴ 60 • written 5.6 years ago by gjl ▴ 10

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1.9k

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dmrseq Methylation

updated 5.6 years ago by keegan ▴ 60 • written 5.6 years ago by sorjuelal • 0

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1.6k

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installation problem dmrseq bumphunter

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by guy.bioinfo ▴ 10

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2.6k

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dmrseq

updated 6.2 years ago by keegan ▴ 60 • written 6.3 years ago by kuckunniwid • 0

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1.2k

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dmrseq

updated 6.5 years ago by keegan ▴ 60 • written 6.5 years ago by swebb1 • 0

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1.5k

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dmrseq bsseq

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by Bruno Verstraeten • 0

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1.7k

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dmrseq dmr dmrs bisulfite methylation

updated 6.9 years ago by keegan ▴ 60 • written 7.0 years ago by l.kremer • 0

13 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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