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dmrseq
•
reset
4
votes
9
replies
1.7k
views
Memory errors using read.bismark?
dmrseq
bsseq
20 months ago • updated 19 months ago
Juan Higareda
• 0
0
votes
1
reply
862
views
dmrseq and polymorphisms
dmrseq
updated 2.2 years ago by
keegan
▴ 60 • written 2.6 years ago by
giancarlo.castellano
• 0
0
votes
1
reply
1.1k
views
dmrseq on a subset of genomic regions
dmrseq
updated 4.7 years ago by
keegan
▴ 60 • written 4.8 years ago by
KIR_F
• 0
0
votes
0
replies
1.4k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
5.6 years ago
marcin.bazyliszek
• 0
0
votes
1
reply
1.1k
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq
methylation
6.1 years ago
sorjuelal
• 0
0
votes
1
reply
1.1k
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
6.3 years ago
Stephanie Hicks
▴ 80
1
vote
1
reply
2.1k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 6.5 years ago by
keegan
▴ 60 • written 6.5 years ago by
gjl
▴ 10
1
vote
4
replies
2.4k
views
dmrseq error: promise already under evaluation??
dmrseq
Methylation
updated 6.5 years ago by
keegan
▴ 60 • written 6.5 years ago by
sorjuelal
• 0
6
votes
5
replies
1.9k
views
dmrseq installation failed
installation problem
dmrseq
bumphunter
updated 7.1 years ago by
shepherl
4.2k • written 7.1 years ago by
guy.bioinfo
▴ 10
3
votes
16
replies
3.3k
views
Internal bug of DMR-Seq?
dmrseq
updated 7.1 years ago by
keegan
▴ 60 • written 7.2 years ago by
kuckunniwid
• 0
0
votes
3
replies
1.4k
views
DMRseq smoothed values
dmrseq
updated 7.3 years ago by
keegan
▴ 60 • written 7.3 years ago by
swebb1
• 0
0
votes
3
replies
1.7k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Bruno Verstraeten
• 0
2
votes
2
replies
2.0k
views
dmrseq: cannot adjust for a covariate
dmrseq
dmr
dmrs
bisulfite
methylation
updated 7.8 years ago by
keegan
▴ 60 • written 7.8 years ago by
l.kremer
• 0
13 results • Page
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Comment: How can I correctly use phyloseq with Docker?
by
Suzy
• 0
The graphics in [Snow Rider][1] are colorful and charming, adding to the festive atmosphere. [1]: https://snowriderio.io
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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