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dmrseq
•
reset
4
votes
9
replies
1.8k
views
Memory errors using read.bismark?
dmrseq
bsseq
21 months ago • updated 20 months ago
Juan Higareda
• 0
0
votes
1
reply
881
views
dmrseq and polymorphisms
dmrseq
updated 2.3 years ago by
keegan
▴ 60 • written 2.7 years ago by
giancarlo.castellano
• 0
0
votes
1
reply
1.2k
views
dmrseq on a subset of genomic regions
dmrseq
updated 4.8 years ago by
keegan
▴ 60 • written 4.9 years ago by
KIR_F
• 0
0
votes
0
replies
1.4k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
5.7 years ago
marcin.bazyliszek
• 0
0
votes
1
reply
1.1k
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq
methylation
6.2 years ago
sorjuelal
• 0
0
votes
1
reply
1.2k
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
6.4 years ago
Stephanie Hicks
▴ 80
1
vote
1
reply
2.2k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 6.6 years ago by
keegan
▴ 60 • written 6.6 years ago by
gjl
▴ 10
1
vote
4
replies
2.4k
views
dmrseq error: promise already under evaluation??
dmrseq
Methylation
updated 6.6 years ago by
keegan
▴ 60 • written 6.6 years ago by
sorjuelal
• 0
6
votes
5
replies
2.0k
views
dmrseq installation failed
installation problem
dmrseq
bumphunter
updated 7.2 years ago by
shepherl
4.2k • written 7.2 years ago by
guy.bioinfo
▴ 10
3
votes
16
replies
3.3k
views
Internal bug of DMR-Seq?
dmrseq
updated 7.2 years ago by
keegan
▴ 60 • written 7.3 years ago by
kuckunniwid
• 0
0
votes
3
replies
1.5k
views
DMRseq smoothed values
dmrseq
updated 7.4 years ago by
keegan
▴ 60 • written 7.4 years ago by
swebb1
• 0
0
votes
3
replies
1.8k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
Bruno Verstraeten
• 0
2
votes
2
replies
2.1k
views
dmrseq: cannot adjust for a covariate
dmrseq
dmr
dmrs
bisulfite
methylation
updated 7.9 years ago by
keegan
▴ 60 • written 7.9 years ago by
l.kremer
• 0
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
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Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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