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Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
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James W. MacDonald
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Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
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dan.gatti
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Very strange. We have the same package versions.
I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
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piffelpaff
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thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
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Michael Love
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Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
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James W. MacDonald
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Oh.
```
> z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE)
> class(counts(z))
[1] "DelayedMatrix"
att…
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