Bioconductor Dnastringset

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940

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dnastringset dnastringsetlist seqnames

6.0 years ago s.ghignone ▴ 10

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4.0k

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dnastringset list stringset

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by vinod.acear ▴ 50

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4.9k

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subseq Xvector dnastringset

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Sophie • 0

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1.0k

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dnastringset aastringset

7.7 years ago XIA.PAN ▴ 20

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6.1k

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DNAstringset

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by XIA.PAN ▴ 20

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5.7k

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dnastringset getseq

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by TimothéeFlutre ▴ 80

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pwmenrich dnastringset

updated 8.7 years ago by Robert Stojnic ▴ 50 • written 8.7 years ago by sekawaiwai2006 ▴ 20

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1.6k

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dnastringset parallel iterators

8.9 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by vinod.acear ▴ 50

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19k

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dnastringset

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by komal.rathi ▴ 120

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2.0k

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vcf testthat dnastringset

9.1 years ago TimothéeFlutre ▴ 80

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4.6k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.6 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

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