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dnastringset
•
reset
2
votes
1
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1.2k
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
7.2 years ago
s.ghignone
▴ 10
3
votes
4
replies
4.5k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
vinod.acear
▴ 50
2
votes
5
replies
5.7k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Sophie
• 0
0
votes
2
replies
1.4k
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
8.9 years ago
XIA.PAN
▴ 20
6
votes
6
replies
7.4k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
6.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.4k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.8 years ago by
Robert Stojnic
▴ 50 • written 9.8 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.9k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
10.1 years ago
ben.ward
▴ 30
0
votes
3
replies
1.6k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 10.2 years ago by
Hervé Pagès
16k • written 10.2 years ago by
vinod.acear
▴ 50
15
votes
2
replies
20k
views
Extract sequence from DNAStringSet object
dnastringset
updated 10.2 years ago by
Martin Morgan
25k • written 10.2 years ago by
komal.rathi
▴ 120
3
votes
8
replies
2.5k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
10.2 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
5.3k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
10.7 years ago
dan.gatti
• 0
12 results • Page
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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