Bioconductor Dnastringset

Showing : dnastringset • reset

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1.1k

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dnastringset dnastringsetlist seqnames

6.8 years ago s.ghignone ▴ 10

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4.3k

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dnastringset list stringset

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by vinod.acear ▴ 50

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5.5k

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subseq Xvector dnastringset

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Sophie • 0

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1.3k

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dnastringset aastringset

8.5 years ago XIA.PAN ▴ 20

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7.2k

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DNAstringset

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by XIA.PAN ▴ 20

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6.1k

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dnastringset getseq

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by TimothéeFlutre ▴ 80

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2.3k

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pwmenrich dnastringset

updated 9.4 years ago by Robert Stojnic ▴ 50 • written 9.4 years ago by sekawaiwai2006 ▴ 20

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1.8k

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dnastringset parallel iterators

9.7 years ago ben.ward ▴ 30

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1.4k

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DNAStringSet sample

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by vinod.acear ▴ 50

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20k

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dnastringset

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by komal.rathi ▴ 120

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2.3k

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vcf testthat dnastringset

9.8 years ago TimothéeFlutre ▴ 80

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5.0k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

10.4 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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