Bioconductor Dnastringset

Showing : dnastringset • reset

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933

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dnastringset dnastringsetlist seqnames

6.0 years ago s.ghignone ▴ 10

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4.0k

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dnastringset list stringset

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by vinod.acear ▴ 50

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4.9k

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subseq Xvector dnastringset

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Sophie • 0

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993

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dnastringset aastringset

7.7 years ago XIA.PAN ▴ 20

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6.0k

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DNAstringset

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by XIA.PAN ▴ 20

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5.7k

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dnastringset getseq

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by TimothéeFlutre ▴ 80

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2.0k

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pwmenrich dnastringset

updated 8.6 years ago by Robert Stojnic ▴ 50 • written 8.6 years ago by sekawaiwai2006 ▴ 20

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1.6k

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dnastringset parallel iterators

8.9 years ago ben.ward ▴ 30

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1.3k

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DNAStringSet sample

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by vinod.acear ▴ 50

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19k

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dnastringset

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by komal.rathi ▴ 120

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2.0k

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vcf testthat dnastringset

9.0 years ago TimothéeFlutre ▴ 80

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4.6k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

9.6 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k