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dnastringset
•
reset
2
votes
1
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1.2k
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
7.1 years ago
s.ghignone
▴ 10
3
votes
4
replies
4.5k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
vinod.acear
▴ 50
2
votes
5
replies
5.6k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.5 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Sophie
• 0
0
votes
2
replies
1.4k
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
8.8 years ago
XIA.PAN
▴ 20
6
votes
6
replies
7.3k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
6.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.4k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.7 years ago by
Robert Stojnic
▴ 50 • written 9.7 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.9k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
10.0 years ago
ben.ward
▴ 30
0
votes
3
replies
1.5k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 10.1 years ago by
Hervé Pagès
16k • written 10.1 years ago by
vinod.acear
▴ 50
15
votes
2
replies
20k
views
Extract sequence from DNAStringSet object
dnastringset
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
komal.rathi
▴ 120
3
votes
8
replies
2.4k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
10.1 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
5.2k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
10.6 years ago
dan.gatti
• 0
12 results • Page
1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Hervé Pagès
16k
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