Showing : dnastringset • reset
2
votes
1
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376
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset dnastringsetlist seqnames
3.5 years ago s.ghignone ▴ 10
3
votes
4
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2.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset list stringset
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 50
2
votes
5
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3.0k
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How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq Xvector dnastringset
updated 5.0 years ago by 15k • written 5.0 years ago by • 0
0
votes
2
replies
513
views
how to deal with multiple barcodes/index in the analysis
dnastringset aastringset
5.2 years ago XIA.PAN ▴ 20
5
votes
6
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2.6k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 5.2 years ago by 15k • written 5.2 years ago by ▴ 20
3
votes
1
reply
3.8k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 5.9 years ago by 15k • written 5.9 years ago by ▴ 80
2
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3
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1.1k
views
visualing pwm motif on a DNAstring
pwmenrich dnastringset
updated 6.2 years ago by ▴ 50 • written 6.2 years ago by ▴ 20
0
votes
4
replies
970
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset parallel iterators
6.4 years ago ben.ward ▴ 30
0
votes
3
replies
643
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I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet sample
updated 6.5 years ago by 15k • written 6.5 years ago by ▴ 50
14
votes
2
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13k
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Extract sequence from DNAStringSet object
dnastringset
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 100
3
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8
replies
975
views
problem with @ranges@start in DNAStringSet
vcf testthat dnastringset
6.6 years ago TimothéeFlutre ▴ 80
1
vote
5
replies
3.2k
views
Converting a DNAStringSetList to characters quickly
readVcf DNAStringSet DNAStringSetList variantannotation readvcf
7.1 years ago dan.gatti • 0
12 results • Page 1 of 1
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Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2 by andrebolerbarros ▴ 10
Hi Michael, I'm using the "contrast" parameter, so I cannot use apeglm with that, as far as I know. The "coef" will not allow me to do eve…
Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k
So the way the p-values are generated (non-parametric) you won't get a ranking among these that are highly significant. You can use logFC. …
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2 by Michael Love 36k
Note sure why it's having difficulty converging. You could use apeglm?
Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
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Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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