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ebseq
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571
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.0 years ago
lli2
• 0
0
votes
3
replies
919
views
Heatmap for ebseq2 output
ebseq
5.0 years ago
drkousi31
• 0
5
votes
1
reply
1.0k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
marhabaie
• 0
0
votes
0
replies
932
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
7.9 years ago
jean.keller
▴ 10
0
votes
0
replies
935
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
8.0 years ago
jean.keller
▴ 10
1
vote
1
reply
1.2k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
8.6 years ago
vieuphoria
▴ 10
0
votes
0
replies
915
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
8.8 years ago
jbarker2
• 0
0
votes
0
replies
1.4k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
8.9 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.3k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
9.1 years ago
jbarker2
• 0
0
votes
2
replies
2.8k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 10.0 years ago by
James W. MacDonald
65k • written 10.0 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
1.6k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.1 years ago by
Koji Kadota
▴ 10 • written 10.1 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.7k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.1 years ago by
Jianqiang SUN
▴ 10 • written 10.1 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.0k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
10.3 years ago
Dario Strbenac
★ 1.5k
13 results • Page
1 of 1
Recent ...
Replies
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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