Showing : edge • reset
1
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7
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1.6k
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 20
0
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2
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1.3k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 17 months ago by 50k • written 17 months ago by • 0
0
votes
2
replies
864
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
0
votes
0
replies
860
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
5.7 years ago rubi ▴ 110
0
votes
0
replies
763
views
Fold Change Calculation in edge package
edge microarray limma affy
4.9 years ago soumyab.g ▴ 10
1
vote
1
reply
645
views
export the significant results from EDGE
microarray edge
5.0 years ago • updated 4.9 years ago xgt1986627 ▴ 10
0
votes
2
replies
621
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
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0
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620
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Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.2 years ago emily • 0
0
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0
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603
views
static experiment in EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
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0
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596
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Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago xgt1986627 ▴ 10
12 results • Page 1 of 1
Recent ...
Replies
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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