Showing : edge • reset
3
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2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 20
1
vote
7
replies
1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0
1
vote
1
reply
645
views
export the significant results from EDGE
microarray edge
5.0 years ago • updated 4.9 years ago xgt1986627 ▴ 10
0
votes
0
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603
views
static experiment in EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
votes
2
replies
621
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
0
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596
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
763
views
Fold Change Calculation in edge package
edge microarray limma affy
4.9 years ago soumyab.g ▴ 10
0
votes
2
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864
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
0
votes
0
replies
622
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.2 years ago emily • 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 17 months ago by 50k • written 17 months ago by • 0
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
0
replies
860
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
5.7 years ago rubi ▴ 110
12 results • Page 1 of 1
Recent ...
Replies
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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