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edge
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1
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7
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1.6k
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.2 years ago • updated 6.2 years ago
joe.d.moore.ii
• 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
Arne Muller
▴ 20
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge
timecourse
fittimeseries
updated 8.5 years ago by
Andrew Bass
• 0 • written 8.5 years ago by
warren.anderson
• 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR
edge
updated 17 months ago by
Gordon Smyth
50k • written 17 months ago by
Isa
• 0
0
votes
2
replies
864
views
Longitudinal Time-Course microarray experiment with two time points
edge
DGE
microarray
updated 4.5 years ago by
Gordon Smyth
50k • written 4.5 years ago by
joanasabinopinto
• 0
0
votes
0
replies
862
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge
differential gene expression
timecourse
interaction
5.7 years ago
rubi
▴ 110
0
votes
0
replies
765
views
Fold Change Calculation in edge package
edge
microarray
limma
affy
4.9 years ago
soumyab.g
▴ 10
1
vote
1
reply
645
views
export the significant results from EDGE
microarray
edge
5.0 years ago • updated 4.9 years ago
xgt1986627
▴ 10
0
votes
2
replies
623
views
Can EDGE analyse RNA-seq data?
edge
RNA-seq
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
xgt1986627
▴ 10
0
votes
0
replies
623
views
Error in svd(X) when using edge lrt (or odp) function.
edge
Microarray
longitudinal
2.2 years ago
emily
• 0
0
votes
0
replies
603
views
static experiment in EDGE
microarray
edge
4.9 years ago
xgt1986627
▴ 10
0
votes
0
replies
596
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago
xgt1986627
▴ 10
12 results • Page
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Recent ...
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
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