Bioconductor EdgeR

Showing : edgeR • reset

votes

views

RNASeqData edgeR

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by z_bahari • 0

vote

371

views

fgsea edgeR

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by gene_bioconductor ▴ 10

vote

177

views

edgeR

updated 11 days ago by Gordon Smyth 50k • written 11 days ago by k___ ▴ 30

votes

replies

427

views

edgeR

18 days ago • updated 13 days ago Jonathan ▴ 10

votes

replies

133

views

DGEList edgeR

16 days ago prity6459 • 0

votes

replies

189

views

subsettingdata edgeR designmatrix

updated 16 days ago by Gordon Smyth 50k • written 17 days ago by prity6459 • 0

votes

176

views

limma edgeR RNASeq

updated 16 days ago by Gordon Smyth 50k • written 17 days ago by Shaimaa Gamal • 0

votes

replies

334

views

rna-seq edgeR

updated 14 days ago by Gordon Smyth 50k • written 27 days ago by Netanel • 0

vote

replies

348

views

limmaGUI edgeR limma

updated 20 days ago by Gordon Smyth 50k • written 25 days ago by Simran • 0

votes

replies

425

views

edgeR DifferentialExpression

updated 22 days ago by ATpoint ★ 4.1k • written 26 days ago by nhaus ▴ 30

vote

replies

256

views

edgeR DifferentialExpression

updated 29 days ago by James W. MacDonald 65k • written 4 weeks ago by Shaimaa Gamal • 0

votes

replies

1.6k

views

salmon edgeR tximport nf-core gene_counts

updated 16 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

votes

replies

7.8k

views

deseq2 edgeR rna-seq

updated 17 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

13 results • Page 1 of 1

Recent ...

Replies

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Votes

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Awards • All