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Mike Smith
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emmak
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updated 7.8 years ago by
Mike Smith
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Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
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0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
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JKim
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Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴
10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be:
```
hist(fit2$p.value[,"KO_vs_WT"])
```
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