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epicarray
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Struggle with the replicates of epic array data
limma
epicarray
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
written 12 weeks ago by
Melisa Tecik
• 0
0
votes
5
replies
988
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Jitendra
▴ 10
5
votes
5
replies
1.2k
views
limma output for epic array methylation data
linearregression
epicarray
MethylationArray
limma
18 months ago
Jitendra
▴ 10
0
votes
3
replies
1.5k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
Jitendra
▴ 10
0
votes
2
replies
1.5k
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
22 months ago • updated 21 months ago
arisarkar88
▴ 40
0
votes
2
replies
1.7k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis
EPICarray
ChAMP
Champ.SVD
3.9 years ago
arisarkar88
▴ 40
3
votes
4
replies
3.6k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 7.4 years ago by
rcavalca
▴ 140 • written 7.4 years ago by
karthikrpad
▴ 10
7 results • Page
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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