Bioconductor Epicarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 13 months ago by Melisa Tecik • 0

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1.3k

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stattistics epicarray Epigenetics DMRcate

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Jitendra ▴ 10

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1.6k

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linearregression epicarray MethylationArray limma

2.4 years ago Jitendra ▴ 10

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1.9k

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RnBeads minfiData minfi EPICarray

updated 2.7 years ago by Basti ▴ 780 • written 2.7 years ago by Jitendra ▴ 10

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1.8k

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champ.load epicarray ChAMP methylationArrayAnalysis

2.7 years ago arisarkar88 ▴ 40

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

4.8 years ago arisarkar88 ▴ 40

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4.1k

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ChAMP methylationepic epicarray epigenomics

updated 8.3 years ago by rcavalca ▴ 140 • written 8.3 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Lluís Revilla Sancho ▴ 760

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20