Bioconductor Epicarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 12 months ago by Melisa Tecik • 0

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stattistics epicarray Epigenetics DMRcate

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by Jitendra ▴ 10

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linearregression epicarray MethylationArray limma

2.3 years ago Jitendra ▴ 10

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1.8k

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RnBeads minfiData minfi EPICarray

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Jitendra ▴ 10

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1.8k

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champ.load epicarray ChAMP methylationArrayAnalysis

2.6 years ago arisarkar88 ▴ 40

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

4.6 years ago arisarkar88 ▴ 40

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ChAMP methylationepic epicarray epigenomics

updated 8.2 years ago by rcavalca ▴ 140 • written 8.2 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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