Bioconductor Epicarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 11 months ago by Melisa Tecik • 0

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stattistics epicarray Epigenetics DMRcate

updated 2.0 years ago by James W. MacDonald 68k • written 2.0 years ago by Jitendra ▴ 10

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linearregression epicarray MethylationArray limma

2.2 years ago Jitendra ▴ 10

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1.8k

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RnBeads minfiData minfi EPICarray

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Jitendra ▴ 10

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1.8k

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champ.load epicarray ChAMP methylationArrayAnalysis

2.5 years ago arisarkar88 ▴ 40

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1.9k

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

4.6 years ago arisarkar88 ▴ 40

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ChAMP methylationepic epicarray epigenomics

updated 8.1 years ago by rcavalca ▴ 140 • written 8.1 years ago by karthikrpad ▴ 10

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40