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Job:
PhD-position in bioinformatics / computational biology
Mergeomics
Epigenome
Evolution
NGS
Aging
18 days ago
arne.sahm
• 0
0
votes
0
replies
609
views
Job:
PostDoc in Computational Biology at Leibniz Institute for Environmental Medicine
Aging
Epigenome
Bioinformatics
Mergeomics
Evolution
11 months ago
arne.sahm
• 0
0
votes
0
replies
726
views
Job:
PhD student position: Vertebrate brain origins and evolution
PhD
single-cell
ComparativeGenomics
evolution
2.5 years ago
henrik.kaessmann
• 0
0
votes
0
replies
719
views
Job:
Bioinformatics postdoc in comparative genomics
single-cell
evolution
Genomics
Postdoc
2.5 years ago
henrik.kaessmann
• 0
0
votes
0
replies
2.6k
views
Job:
Postdoc in Population Genomics - UC Davis
bioinformatics
evolution
sequencing
genome analysis
genomics
Job
5.5 years ago
hschmidt
• 0
0
votes
0
replies
777
views
display of synteny regions across multiple species
synteny
translocation
evolution
conservation
5.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Job:
Post-doc in mathematical modeling on phenotypic evolution and embryonic development
job
computational biology
simulation
evolution
Gene network
Job
6.7 years ago
isaac.salazar
• 0
0
votes
0
replies
1.2k
views
Job:
postdoc 3yrs bioinformatics bacterial population genomics: Wellington, New Zealand
bacteria
evolution
population
genomics
Job
6.8 years ago
una.ren
• 0
0
votes
0
replies
2.0k
views
Job:
Two Postdoc Positions in Evolutionary Single-Cell Genomics (experimental and computational)
evolution
single-cell
development
differentiation
cool
Job
7.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
Job:
Bioinformatics Postdoc in Functional Evolutionary Genomics, Heidelberg, Germany
rnaseq
genomics
evolution
Job
8.1 years ago
henrik.kaessmann
• 0
10 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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