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factor
•
reset
3
votes
11
replies
3.4k
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DESeq function taking too long
deseq2
deseq
factor
rnaseq
updated 6.8 years ago by
Peter Langfelder
★ 3.0k • written 6.8 years ago by
sup230
▴ 30
0
votes
2
replies
1.8k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
7.5 years ago
wcstcyx
▴ 30
2
votes
3
replies
1.6k
views
GenomicRanges_RaggedExperiment Error in as background, class mcol no method or default for coercing logical to factor
genomicranges
RaggedExperiment
coercion
logical
factor
updated 6.4 years ago by
Marcel Ramos
690 • written 6.4 years ago by
Taran
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
ariel
▴ 20
0
votes
0
replies
814
views
Package in R to determine which factor values are overrepresented within a particular factor of interest
R
overrrepresentation
factor
variable
factor enrichment
7.5 years ago
IOM
▴ 20
5
votes
4
replies
781
views
DESeq2 with multiple variable give me different results
Factor
Levels
Dispersionestimates
DESeq2
2.5 years ago
rafaelsolersanblas
▴ 50
0
votes
1
reply
661
views
DESeq2: Difference between two groups of conditions
factor
DESeq2
MultipleComparison
updated 2.4 years ago by
swbarnes2
★ 1.3k • written 2.4 years ago by
diegocastano182
• 0
7 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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