Bioconductor FeatureCounts

Showing : featureCounts • reset

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2.6k

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featurecounts Rsubread

written 12 months ago by chris2.a.white • 0

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4.2k

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featureCounts DESeq2

updated 11 months ago by rohitsatyam102 ▴ 20 • written 16 months ago by Bioinformagician • 0

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5.0k

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RNA-seq featureCounts ht-seq

written 5.4 years ago by Arindam ▴ 80

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968

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RNA-Seq featureCounts Rsubread

updated 10 months ago by Gordon Smyth 53k • written 10 months ago by Arindam ▴ 80

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296

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featureCounts Rsubread

6 months ago Meg • 0

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k