Bioconductor FeatureCounts

Showing : featureCounts • reset

votes

replies

6.2k

views

rsubread featurecounts

updated 3 months ago by Gordon Smyth 50k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

18k

views

featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

votes

replies

752

views

featurecounts Rsubread

3 months ago isaac.vock • 0

vote

replies

4.7k

views

subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

votes

replies

2.3k

views

featurecounts SAM htseqcounts

updated 10 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

votes

replies

442

views

featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

votes

replies

3.5k

views

RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

votes

replies

1.0k

views

RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

votes

replies

1.6k

views

rsubread featurecounts summarizeoverlaps

updated 4 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

votes

replies

255

views

featureCounts Rsubread

4 weeks ago • updated 15 days ago isaac.vock • 0

vote

267

views

featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 12 weeks ago by Alex • 0

votes

868

views

Bioconductor Rsubread featureCounts

updated 12 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

vote

662

views

Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

votes

replies

948

views

rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

votes

replies

143

views

FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

Awards • All