Showing : featureCounts • reset
4
votes
8
replies
1.2k
views
Feature Counts - potential bug with outfile.jcounts
featurecounts Rsubread
3 months ago chris2.a.white • 0
6
votes
5
replies
2.7k
views
What is the importance of `--countReadPairs` in featureCounts on paired end data?
featureCounts DESeq2
updated 11 weeks ago by ▴ 20 • written 7 months ago by • 0
0
votes
4
replies
881
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
8 months ago • updated 7 months ago Jessica • 0
2
votes
4
replies
1.2k
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
12 months ago • updated 9 months ago isaac.vock • 0
1
vote
3
replies
986
views
featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
5 months ago yasmin.hilliam ▴ 10
0
votes
2
replies
4.4k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 4.7 years ago by ▴ 80
2
votes
2
replies
1.9k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps
updated 12 months ago by • 0 • written 8.8 years ago by ▴ 90
4
votes
2
replies
1.2k
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
9 months ago Rachael • 0
1
vote
2
replies
635
views
mates counted separately in case one mate is unmapped (when otherwise counting read pairs)
featureCounts Rsubread
7 months ago Anke • 0
0
votes
1
reply
596
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
updated 3 months ago by 52k • written 12 months ago by • 0
0
votes
1
reply
373
views
[BUG] featureCounts doesn't assign primary alignment of a multi-mapped read, even with `--primary` specified
featureCounts Rsubread
5 months ago isaac.vock • 0
0
votes
1
reply
570
views
To count or not to count multi-overlapping reads?
RNA-Seq featureCounts Rsubread
updated 5 weeks ago by 52k • written 5 weeks ago by ▴ 80
12 results • Page 1 of 1
Recent ...
Replies
Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
Awards • All
Supporter to bhanu.chandra1 • 0
Popular Question to Gordon Smyth 52k
Popular Question to mdeea123 ▴ 10
Popular Question to GA ▴ 10
Popular Question to Elizabeth • 0
Locations • All
Australia, 4 minutes ago
The city by the bay, 13 minutes ago
WEHI, Melbourne, Australia, 28 minutes ago
United States, 32 minutes ago
United States, 1 hour ago
Traffic: 545 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6