Bioconductor Featurecounts

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6.1k

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rsubread featurecounts

updated 3 months ago by Gordon Smyth 50k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

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18k

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featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

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749

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featurecounts Rsubread

3 months ago isaac.vock • 0

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4.7k

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subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

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2.3k

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featurecounts SAM htseqcounts

updated 10 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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440

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featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.0k

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RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 4 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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254

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featureCounts Rsubread

4 weeks ago • updated 14 days ago isaac.vock • 0

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264

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featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 12 weeks ago by Alex • 0

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864

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Bioconductor Rsubread featureCounts

updated 12 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

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661

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Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

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945

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rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

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143

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FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

15 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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