Bioconductor Filtervcf

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2.9k

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variantannotation vcf readvcf filtervcf scanvcfparam

7.4 years ago Didi ▴ 10

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3.3k

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filtervcf

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by Bogdan ▴ 670

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filtervcf variantannotation

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by stephen sefick ▴ 60

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variantannotation filtervcf

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by TimothéeFlutre ▴ 80

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variantannotation vcf filtervcf

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by TimothéeFlutre ▴ 80

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1.3k

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variantannotation filtervcf vcf

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by TimothéeFlutre ▴ 80

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1.7k

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by pau.puigdevall • 0

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1.7k

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VariantAnnotation filterVcf

9.4 years ago pau.puigdevall • 0

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2.3k

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variantannotation filterVcf readvcfasvranges filterRules

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by Sigve Nakken ▴ 50

9 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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