Showing : filtervcf • reset
2
votes
5
replies
3.5k
views
VariantAnnotation: Error with ScanVcfParam
variantannotation vcf readvcf filtervcf scanvcfparam
8.5 years ago Didi ▴ 10
5
votes
13
replies
4.0k
views
about filtering variants in a VCF file
filtervcf
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 670
0
votes
1
reply
1.3k
views
VariantAnnotation -filterVcf/FilterRules - 3 fxns as list to FilterRules throughs and erro
filtervcf variantannotation
updated 9.2 years ago by 25k • written 9.2 years ago by ▴ 60
2
votes
1
reply
1.6k
views
Error in extractROWS(x, eval(filter, x))
variantannotation filtervcf
updated 10.3 years ago by ★ 11k • written 10.3 years ago by ▴ 80
2
votes
2
replies
1.8k
views
a filter works alone but not with other filters
variantannotation vcf filtervcf
updated 10.3 years ago by 25k • written 10.3 years ago by ▴ 80
5
votes
2
replies
1.6k
views
filter "isSnp" for VCF
variantannotation filtervcf vcf
updated 10.3 years ago by ★ 11k • written 10.3 years ago by ▴ 80
0
votes
2
replies
2.0k
views
filterVcf: error with param argument
VariantAnnotation filterVcf ScanVcfParam vcf writeVcf
updated 10.5 years ago by 25k • written 10.5 years ago by • 0
3
votes
5
replies
2.1k
views
filterVcf: crash with isSNV() filter argument
VariantAnnotation filterVcf
10.5 years ago pau.puigdevall • 0
4
votes
4
replies
2.8k
views
readVcfAsVRanges + FilterRules
variantannotation filterVcf readvcfasvranges filterRules
updated 10.9 years ago by 25k • written 11.0 years ago by ▴ 50
9 results • Page 1 of 1
Recent ...
Replies
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Awards • All
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Popular Question to rcavalca ▴ 140
Popular Question to James Aiden • 0
Locations • All
United States, 40 minutes ago
Melbourne, Australia, 1 hour ago
The city by the bay, 1 hour ago
Seattle, WA, United States, 1 hour ago
United States, 1 hour ago
Traffic: 879 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6