Bioconductor For loop

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1.4k

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flowdensity flowcore for loop

updated 5.9 years ago by Bioconductor Community 0 • written 6.1 years ago by beshea.jj • 0

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928

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drimseq swimming downstream for loop sapply

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by georgewwp • 0

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1.0k

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densityplot stacked for loop

6.6 years ago k.teijgeler • 0

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1.6k

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Exprs Lapply FCS for loop flowcore

updated 7.2 years ago by Jiang, Mike ★ 1.3k • written 7.2 years ago by Wilson Yeo • 0

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4.9k

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ComplexHeatmap for loop Heatmap function

updated 2.4 years ago by chm • 0 • written 8.4 years ago by An De Bondt ▴ 40

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2.2k

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edger forloop

updated 3.7 years ago by Gordon Smyth 52k • written 8.4 years ago by humberto_munoz • 0

6 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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